Variant report

Variant	rs16940751
Chromosome Location	chr15:59051714-59051715
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59049338..59052129-chr15:59052697..59054874,3	K562	blood:
2	chr15:59042046..59047020-chr15:59050998..59056418,7	K562	blood:
3	chr15:59051351..59055079-chr15:59061641..59063693,4	K562	blood:
4	chr15:59040723..59043595-chr15:59050173..59052716,2	K562	blood:

Variant related genes	Relation type
ENSG00000137845	Chromatin interaction
ENSG00000245975	Chromatin interaction
ENSG00000128923	Chromatin interaction
ENSG00000200318	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs16940570	0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs16940574	0.85[ASW][hapmap];0.89[LWK][hapmap];0.93[MKK][hapmap];0.89[YRI][hapmap];1.00[EUR][1000 genomes]
rs16940584	0.85[ASW][hapmap];0.89[LWK][hapmap];0.91[MKK][hapmap];0.89[YRI][hapmap];1.00[EUR][1000 genomes]
rs16940586	0.94[YRI][hapmap];1.00[EUR][1000 genomes]
rs16940602	0.85[ASW][hapmap];0.89[LWK][hapmap];0.93[MKK][hapmap];0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs16940614	0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs16940638	0.86[MKK][hapmap];1.00[EUR][1000 genomes]
rs16940723	0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940766	0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940768	0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940771	0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16953381	0.94[YRI][hapmap]
rs2013878	0.85[ASW][hapmap];0.89[LWK][hapmap];0.93[MKK][hapmap];0.95[YRI][hapmap]
rs2414609	1.00[EUR][1000 genomes]
rs4277293	0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs55939313	1.00[EUR][1000 genomes]
rs56039925	1.00[EUR][1000 genomes]
rs56357958	1.00[EUR][1000 genomes]
rs56935364	1.00[EUR][1000 genomes]
rs56942476	1.00[EUR][1000 genomes]
rs57083702	1.00[EUR][1000 genomes]
rs57845422	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58937576	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61678411	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6494024	1.00[EUR][1000 genomes]
rs7163948	0.82[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164104	0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs7166901	0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs7167240	0.85[ASW][hapmap];0.89[LWK][hapmap];0.93[MKK][hapmap];0.89[YRI][hapmap];1.00[EUR][1000 genomes]
rs7168066	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7172673	1.00[EUR][1000 genomes]
rs7173048	1.00[EUR][1000 genomes]
rs7174279	0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs7175610	0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs7176715	0.84[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016920	1.00[EUR][1000 genomes]
rs74016943	1.00[EUR][1000 genomes]
rs74016946	1.00[EUR][1000 genomes]
rs74016947	1.00[EUR][1000 genomes]
rs74017259	1.00[EUR][1000 genomes]
rs74017261	1.00[EUR][1000 genomes]
rs74017264	1.00[EUR][1000 genomes]
rs74017265	1.00[EUR][1000 genomes]
rs74017270	1.00[EUR][1000 genomes]
rs74017281	1.00[EUR][1000 genomes]
rs74017286	1.00[EUR][1000 genomes]
rs74017293	1.00[EUR][1000 genomes]
rs74017296	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017297	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017298	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017300	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017301	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74017302	0.89[AFR][1000 genomes]
rs74018920	1.00[EUR][1000 genomes]
rs8025475	1.00[EUR][1000 genomes]
rs8027618	1.00[EUR][1000 genomes]
rs8028872	1.00[EUR][1000 genomes]
rs8029869	0.85[ASW][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];0.81[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8031250	0.85[ASW][hapmap];0.89[LWK][hapmap];0.93[MKK][hapmap];0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs8031412	0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs8032451	0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs8033613	1.00[EUR][1000 genomes]
rs8043275	1.00[EUR][1000 genomes]
rs881117	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	esv1843037	chr15:59005922-59115159	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	nsv428638	chr15:59032300-59126567	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59042600-59062600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:59043000-59062400	Weak transcription	Psoas Muscle	Psoas
3	chr15:59047600-59052200	Weak transcription	Fetal Thymus	thymus

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