Variant report

Variant	rs74017301
Chromosome Location	chr15:59039753-59039754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:59033413..59035094-chr15:59037580..59040574,2	MCF-7	breast:
2	chr15:59037438..59039932-chr15:59074278..59075927,2	K562	blood:
3	chr15:59038007..59039912-chr15:59224020..59226642,2	K562	blood:
4	chr15:59038486..59040541-chr15:59040847..59043052,2	MCF-7	breast:
5	chr15:59036715..59039912-chr15:59224020..59227520,4	K562	blood:
6	chr15:59029139..59031905-chr15:59037322..59039865,2	K562	blood:
7	chr15:59038586..59040600-chr15:59061472..59063196,2	MCF-7	breast:
8	chr15:59038832..59043387-chr15:59060936..59065101,7	K562	blood:
9	chr15:59025699..59027960-chr15:59038496..59040906,2	K562	blood:
10	chr15:59038297..59040684-chr15:59062023..59064317,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000137845	Chromatin interaction
ENSG00000137776	Chromatin interaction
ENSG00000128923	Chromatin interaction
ENSG00000245975	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs16940570	1.00[EUR][1000 genomes]
rs16940574	1.00[EUR][1000 genomes]
rs16940584	1.00[EUR][1000 genomes]
rs16940586	1.00[EUR][1000 genomes]
rs16940602	1.00[EUR][1000 genomes]
rs16940614	1.00[EUR][1000 genomes]
rs16940638	1.00[EUR][1000 genomes]
rs16940723	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940751	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16940766	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940768	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940771	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2414609	1.00[EUR][1000 genomes]
rs4277293	1.00[EUR][1000 genomes]
rs55939313	1.00[EUR][1000 genomes]
rs56039925	1.00[EUR][1000 genomes]
rs56357958	1.00[EUR][1000 genomes]
rs56935364	1.00[EUR][1000 genomes]
rs56942476	1.00[EUR][1000 genomes]
rs57083702	1.00[EUR][1000 genomes]
rs57845422	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58937576	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61678411	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6494024	1.00[EUR][1000 genomes]
rs7163948	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164104	1.00[EUR][1000 genomes]
rs7166901	1.00[EUR][1000 genomes]
rs7167240	1.00[EUR][1000 genomes]
rs7168066	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7172673	1.00[EUR][1000 genomes]
rs7173048	1.00[EUR][1000 genomes]
rs7174279	1.00[EUR][1000 genomes]
rs7175610	1.00[EUR][1000 genomes]
rs7176715	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016920	1.00[EUR][1000 genomes]
rs74016943	1.00[EUR][1000 genomes]
rs74016946	1.00[EUR][1000 genomes]
rs74016947	1.00[EUR][1000 genomes]
rs74017259	1.00[EUR][1000 genomes]
rs74017261	1.00[EUR][1000 genomes]
rs74017264	1.00[EUR][1000 genomes]
rs74017265	1.00[EUR][1000 genomes]
rs74017270	1.00[EUR][1000 genomes]
rs74017281	1.00[EUR][1000 genomes]
rs74017286	1.00[EUR][1000 genomes]
rs74017293	1.00[EUR][1000 genomes]
rs74017296	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017297	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017298	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017300	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017302	0.87[AFR][1000 genomes]
rs74018920	1.00[EUR][1000 genomes]
rs8025475	1.00[EUR][1000 genomes]
rs8027618	1.00[EUR][1000 genomes]
rs8028872	1.00[EUR][1000 genomes]
rs8029869	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8031250	1.00[EUR][1000 genomes]
rs8031412	1.00[EUR][1000 genomes]
rs8032451	1.00[EUR][1000 genomes]
rs8033613	1.00[EUR][1000 genomes]
rs8043275	1.00[EUR][1000 genomes]
rs881117	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	esv1843037	chr15:59005922-59115159	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	nsv428638	chr15:59032300-59126567	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59022200-59040200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr15:59023600-59040000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr15:59025600-59040000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr15:59027000-59039800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr15:59027600-59040200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:59033600-59040000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr15:59033600-59040400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr15:59035200-59040200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:59035400-59039800	Weak transcription	Adipose Nuclei	Adipose
10	chr15:59035600-59040200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:59035600-59040200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:59035600-59040800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:59035600-59040800	Weak transcription	Lung	lung
14	chr15:59036000-59039800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr15:59036000-59040000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr15:59036200-59040000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:59036400-59040000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:59036400-59040000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr15:59037600-59040200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:59037600-59040200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr15:59037800-59040000	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr15:59037800-59040000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr15:59037800-59040200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:59037800-59040200	Enhancers	Colon Smooth Muscle	Colon
25	chr15:59037800-59040400	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr15:59037800-59042400	Active TSS	GM12878-XiMat	blood
27	chr15:59037800-59042600	Active TSS	HSMMtube	muscle
28	chr15:59037800-59043000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:59038000-59039800	Enhancers	Brain Cingulate Gyrus	brain
30	chr15:59038000-59039800	Enhancers	Fetal Intestine Large	intestine
31	chr15:59038000-59039800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr15:59038000-59040000	Enhancers	Liver	Liver
33	chr15:59038000-59040000	Enhancers	Fetal Lung	lung
34	chr15:59038000-59040200	Enhancers	Primary B cells from peripheral blood	blood
35	chr15:59038000-59042800	Active TSS	Right Atrium	heart
36	chr15:59038000-59043000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr15:59038200-59040000	Enhancers	Primary hematopoietic stem cells	blood
38	chr15:59038200-59040000	Enhancers	Fetal Heart	heart
39	chr15:59038200-59040600	Flanking Active TSS	Dnd41	blood
40	chr15:59038200-59042600	Active TSS	NHLF	lung
41	chr15:59038400-59040800	Flanking Active TSS	Primary T cells from cord blood	blood
42	chr15:59038400-59042800	Active TSS	HSMM	muscle
43	chr15:59038400-59043200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:59038600-59039800	Enhancers	Osteobl	bone
45	chr15:59038600-59040000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:59038600-59040200	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr15:59038600-59040600	Weak transcription	Small Intestine	intestine
48	chr15:59038600-59040800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr15:59038600-59041200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr15:59038600-59042800	Active TSS	Right Ventricle	heart

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