Variant report

Variant	rs57083702
Chromosome Location	chr15:58877853-58877854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:34)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:34 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:58877683-58878679	GM12891	blood:	n/a	n/a
2	PAX5	chr15:58877738-58878274	GM12878	blood:	n/a	n/a
3	ZMIZ1	chr15:58877206-58877861	K562	blood:	n/a	n/a
4	RUNX3	chr15:58877563-58878606	GM12878	blood:	n/a	n/a
5	POLR2A	chr15:58877731-58878169	GM12892	blood:	n/a	n/a
6	MEF2A	chr15:58877717-58878245	GM12878	blood:	n/a	n/a
7	EBF1	chr15:58877744-58878233	GM12878	blood:	n/a	n/a
8	BCL3	chr15:58877805-58878322	K562	blood:	n/a	n/a
9	POLR2A	chr15:58877791-58878071	MCF-7	breast:	n/a	n/a
10	POLR2A	chr15:58877649-58878736	GM12891	blood:	n/a	n/a
11	POLR2A	chr15:58877712-58878521	GM12892	blood:	n/a	n/a
12	RUNX3	chr15:58877595-58878545	GM12878	blood:	n/a	n/a
13	POLR2A	chr15:58877150-58878766	A549	lung:	n/a	n/a
14	POLR2A	chr15:58877643-58878742	GM12891	blood:	n/a	n/a
15	POLR2A	chr15:58877039-58878602	HepG2	liver:	n/a	n/a
16	ATF2	chr15:58877697-58878301	GM12878	blood:	n/a	n/a
17	POLR2A	chr15:58877818-58877859	HUVEC	blood vessel:	n/a	n/a
18	POLR2A	chr15:58877761-58877990	GM12878	blood:	n/a	n/a
19	NFIC	chr15:58877554-58878366	GM12878	blood:	n/a	n/a
20	POLR2A	chr15:58877839-58877955	K562	blood:	n/a	n/a
21	POLR2A	chr15:58877571-58878642	GM12878	blood:	n/a	n/a
22	MTA3	chr15:58877384-58878686	GM12878	blood:	n/a	n/a
23	POLR2A	chr15:58877136-58878670	GM12878	blood:	n/a	n/a
24	FOSL2	chr15:58877752-58878354	HepG2	liver:	n/a	n/a
25	POLR2A	chr15:58877789-58878260	GM12891	blood:	n/a	n/a
26	POLR2A	chr15:58877610-58878621	GM12892	blood:	n/a	n/a
27	POLR2A	chr15:58877084-58878767	K562	blood:	n/a	n/a
28	PAX5	chr15:58877609-58878526	GM12878	blood:	n/a	n/a
29	IKZF1	chr15:58877541-58878378	GM12878	blood:	n/a	n/a
30	POLR2A	chr15:58876928-58878736	GM12878	blood:	n/a	n/a
31	POLR2A	chr15:58877135-58878659	Hela-S3	cervix:	n/a	n/a
32	MTA3	chr15:58877761-58878294	GM12878	blood:	n/a	n/a
33	PAX5	chr15:58877713-58878255	GM12878	blood:	n/a	n/a
34	NFIC	chr15:58877532-58878367	GM12878	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58578437..58580327-chr15:58877282..58879701,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000259250	TF binding region

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs16940570	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940574	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940584	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940586	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940602	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940614	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940638	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940723	1.00[EUR][1000 genomes]
rs16940751	1.00[EUR][1000 genomes]
rs16940766	1.00[EUR][1000 genomes]
rs16940768	1.00[EUR][1000 genomes]
rs16940771	1.00[EUR][1000 genomes]
rs16953381	1.00[AFR][1000 genomes]
rs2013878	0.86[AFR][1000 genomes]
rs2414609	1.00[EUR][1000 genomes]
rs4277293	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55939313	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56039925	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56357958	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56935364	1.00[EUR][1000 genomes]
rs56942476	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57845422	1.00[EUR][1000 genomes]
rs58937576	1.00[EUR][1000 genomes]
rs61678411	1.00[EUR][1000 genomes]
rs6494024	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7163948	1.00[EUR][1000 genomes]
rs7164104	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7166901	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7167240	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7168066	1.00[EUR][1000 genomes]
rs7172673	1.00[EUR][1000 genomes]
rs7173048	1.00[EUR][1000 genomes]
rs7174279	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7175610	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7176715	1.00[EUR][1000 genomes]
rs74016920	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016943	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016946	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016947	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017259	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017261	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017264	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017265	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017270	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74017281	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74017286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74017293	1.00[EUR][1000 genomes]
rs74017296	1.00[EUR][1000 genomes]
rs74017297	1.00[EUR][1000 genomes]
rs74017298	1.00[EUR][1000 genomes]
rs74017300	1.00[EUR][1000 genomes]
rs74017301	1.00[EUR][1000 genomes]
rs74018920	1.00[EUR][1000 genomes]
rs8025475	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8027618	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8028872	1.00[EUR][1000 genomes]
rs8029869	1.00[EUR][1000 genomes]
rs8031250	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8031412	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8032451	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8033613	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8043275	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs881117	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58874600-58889200	Weak transcription	Small Intestine	intestine
2	chr15:58876600-58878600	Enhancers	HSMMtube	muscle
3	chr15:58876600-58878800	Enhancers	Fetal Thymus	thymus
4	chr15:58876600-58879200	Enhancers	Thymus	Thymus
5	chr15:58876800-58878200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:58877000-58878000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr15:58877000-58878000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr15:58877000-58878000	Enhancers	Left Ventricle	heart
9	chr15:58877000-58878000	Enhancers	Right Atrium	heart
10	chr15:58877000-58878600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr15:58877200-58878000	Enhancers	Primary T cells fromperipheralblood	blood
12	chr15:58877200-58878000	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr15:58877200-58878000	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr15:58877200-58878000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:58877200-58878000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr15:58877200-58878000	Flanking Active TSS	K562	blood
17	chr15:58877200-58878200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr15:58877200-58878200	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr15:58877200-58878400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr15:58877200-58878400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr15:58877200-58878600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:58877200-58878600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:58877200-58878600	Enhancers	Fetal Heart	heart
24	chr15:58877400-58878200	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr15:58877400-58878400	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr15:58877400-58878600	Enhancers	Primary hematopoietic stem cells	blood
27	chr15:58877400-58881200	Weak transcription	HSMM	muscle
28	chr15:58877600-58878000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:58877600-58878400	Enhancers	Primary B cells from peripheral blood	blood
30	chr15:58877600-58878600	Flanking Active TSS	GM12878-XiMat	blood
31	chr15:58877600-58879200	Enhancers	Dnd41	blood
32	chr15:58877600-58888200	Weak transcription	Placenta	Placenta
33	chr15:58877600-58888800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr15:58877800-58878000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:58877800-58878000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:58877800-58878200	Enhancers	Primary B cells from cord blood	blood
37	chr15:58877800-58878200	Weak transcription	Brain Substantia Nigra	brain
38	chr15:58877800-58878200	Enhancers	Spleen	Spleen
39	chr15:58877800-58878400	Enhancers	Primary T cells from cord blood	blood
40	chr15:58877800-58878400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
41	chr15:58877800-58878400	Enhancers	Brain Cingulate Gyrus	brain
42	chr15:58877800-58878400	Enhancers	Fetal Kidney	kidney
43	chr15:58877800-58878800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr15:58877800-58882200	Weak transcription	Fetal Intestine Large	intestine
45	chr15:58877800-58888400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr15:58877800-58889000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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