Variant report

Variant	rs74017281
Chromosome Location	chr15:58976749-58976750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYB	chr15:58976552-58976892	K562	blood:	n/a	n/a
2	EP300	chr15:58976669-58976764	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58974278..58977039-chr15:58978595..58981232,2	K562	blood:

Variant related genes	Relation type
ENSG00000182625	TF binding region
ENSG00000182625	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs16940570	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940574	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940584	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940586	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940602	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940614	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940638	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940723	1.00[EUR][1000 genomes]
rs16940751	1.00[EUR][1000 genomes]
rs16940766	1.00[EUR][1000 genomes]
rs16940768	1.00[EUR][1000 genomes]
rs16940771	1.00[EUR][1000 genomes]
rs16953381	0.89[AFR][1000 genomes]
rs2013878	0.92[AFR][1000 genomes]
rs2414609	1.00[EUR][1000 genomes]
rs4277293	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55939313	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56039925	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56357958	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56935364	1.00[EUR][1000 genomes]
rs56942476	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57083702	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57845422	1.00[EUR][1000 genomes]
rs58937576	1.00[EUR][1000 genomes]
rs61678411	1.00[EUR][1000 genomes]
rs6494024	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7163948	1.00[EUR][1000 genomes]
rs7164104	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7166901	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7167240	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7168066	1.00[EUR][1000 genomes]
rs7172673	1.00[EUR][1000 genomes]
rs7173048	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7174279	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7175610	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7176715	1.00[EUR][1000 genomes]
rs74016920	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016943	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016946	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016947	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017259	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017261	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017264	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017265	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017270	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74017286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74017293	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017296	1.00[EUR][1000 genomes]
rs74017297	1.00[EUR][1000 genomes]
rs74017298	1.00[EUR][1000 genomes]
rs74017300	1.00[EUR][1000 genomes]
rs74017301	1.00[EUR][1000 genomes]
rs74018920	1.00[EUR][1000 genomes]
rs8025475	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8027618	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8028872	1.00[EUR][1000 genomes]
rs8029869	1.00[EUR][1000 genomes]
rs8031250	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8031412	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8032451	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8033613	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8043275	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs881117	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv904269	chr15:58906145-58992591	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58905000-58983200	Weak transcription	Esophagus	oesophagus
2	chr15:58923400-58982800	Weak transcription	Lung	lung
3	chr15:58933000-58987000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:58936000-58977000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr15:58936200-58991400	Weak transcription	HMEC	breast
6	chr15:58951200-58987000	Weak transcription	NHEK	skin
7	chr15:58951600-58981800	Weak transcription	Fetal Brain Male	brain
8	chr15:58955200-58988400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr15:58956600-58984400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr15:58956600-58984600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:58956600-58987400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr15:58956800-58980000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr15:58956800-58982000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:58957400-58984400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr15:58957600-58989200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr15:58958800-58989000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr15:58960400-58982800	Weak transcription	Aorta	Aorta
18	chr15:58960400-58989600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:58961600-58987200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr15:58961800-58984600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr15:58962000-58986800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr15:58962000-58987200	Weak transcription	Fetal Lung	lung
23	chr15:58968200-58984000	Weak transcription	Brain Germinal Matrix	brain
24	chr15:58968400-58987000	Weak transcription	Fetal Kidney	kidney
25	chr15:58969200-58984200	Weak transcription	Fetal Intestine Large	intestine
26	chr15:58970600-58987200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr15:58971200-58982400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr15:58971400-58982000	Weak transcription	Primary T cells from cord blood	blood
29	chr15:58971400-58982800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr15:58971400-58982800	Weak transcription	Dnd41	blood
31	chr15:58971800-58982800	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr15:58971800-58984800	Weak transcription	NHDF-Ad	bronchial
33	chr15:58971800-58986800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr15:58972000-58986600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:58972400-58976800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr15:58972400-58982800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:58972400-58984200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr15:58972600-58983000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:58972600-58983000	Weak transcription	Spleen	Spleen
40	chr15:58972600-58984400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:58972600-58984400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:58972600-58988400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr15:58972600-58988800	Weak transcription	Fetal Stomach	stomach
44	chr15:58972600-58989000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr15:58973200-58978200	Weak transcription	Thymus	Thymus
46	chr15:58973200-58984600	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr15:58973200-58984800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr15:58973600-58982400	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr15:58973600-58984200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr15:58974600-58982400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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