Variant report

Variant	rs7172673
Chromosome Location	chr15:58930465-58930466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58919916..58921624-chr15:58929696..58932530,2	K562	blood:
2	chr15:58928689..58931025-chr15:60688699..60690909,2	K562	blood:

Variant related genes	Relation type
ENSG00000182718	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs16940570	1.00[EUR][1000 genomes]
rs16940574	1.00[EUR][1000 genomes]
rs16940584	1.00[EUR][1000 genomes]
rs16940586	1.00[EUR][1000 genomes]
rs16940602	1.00[EUR][1000 genomes]
rs16940614	1.00[EUR][1000 genomes]
rs16940638	0.95[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16940723	1.00[EUR][1000 genomes]
rs16940751	1.00[EUR][1000 genomes]
rs16940766	1.00[EUR][1000 genomes]
rs16940768	1.00[EUR][1000 genomes]
rs16940771	1.00[EUR][1000 genomes]
rs2414609	1.00[EUR][1000 genomes]
rs4277293	1.00[EUR][1000 genomes]
rs55939313	1.00[EUR][1000 genomes]
rs56039925	1.00[EUR][1000 genomes]
rs56357958	1.00[EUR][1000 genomes]
rs56935364	1.00[EUR][1000 genomes]
rs56942476	1.00[EUR][1000 genomes]
rs57083702	1.00[EUR][1000 genomes]
rs57845422	1.00[EUR][1000 genomes]
rs58937576	1.00[EUR][1000 genomes]
rs61678411	1.00[EUR][1000 genomes]
rs6494024	1.00[EUR][1000 genomes]
rs6494025	0.83[YRI][hapmap]
rs7163948	1.00[EUR][1000 genomes]
rs7164104	1.00[EUR][1000 genomes]
rs7166901	1.00[EUR][1000 genomes]
rs7167240	1.00[EUR][1000 genomes]
rs7168066	1.00[EUR][1000 genomes]
rs7173048	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7174279	1.00[EUR][1000 genomes]
rs7175610	1.00[EUR][1000 genomes]
rs7176715	1.00[EUR][1000 genomes]
rs74016920	1.00[EUR][1000 genomes]
rs74016943	1.00[EUR][1000 genomes]
rs74016946	1.00[EUR][1000 genomes]
rs74016947	1.00[EUR][1000 genomes]
rs74017259	1.00[EUR][1000 genomes]
rs74017261	1.00[EUR][1000 genomes]
rs74017264	1.00[EUR][1000 genomes]
rs74017265	1.00[EUR][1000 genomes]
rs74017270	1.00[EUR][1000 genomes]
rs74017281	1.00[EUR][1000 genomes]
rs74017286	1.00[EUR][1000 genomes]
rs74017293	1.00[EUR][1000 genomes]
rs74017296	1.00[EUR][1000 genomes]
rs74017297	1.00[EUR][1000 genomes]
rs74017298	1.00[EUR][1000 genomes]
rs74017300	1.00[EUR][1000 genomes]
rs74017301	1.00[EUR][1000 genomes]
rs74018920	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8025475	0.91[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8027618	1.00[EUR][1000 genomes]
rs8028872	1.00[EUR][1000 genomes]
rs8029869	1.00[EUR][1000 genomes]
rs8031250	1.00[EUR][1000 genomes]
rs8031412	1.00[EUR][1000 genomes]
rs8032451	1.00[EUR][1000 genomes]
rs8033613	1.00[EUR][1000 genomes]
rs8043275	1.00[EUR][1000 genomes]
rs881117	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1551	chr15:58891639-58936580	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv904269	chr15:58906145-58992591	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv569602	chr15:58914326-58964437	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58891400-58959600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr15:58905000-58983200	Weak transcription	Esophagus	oesophagus
3	chr15:58905400-58971800	Weak transcription	Spleen	Spleen
4	chr15:58905600-58976400	Weak transcription	Gastric	stomach
5	chr15:58906400-58976400	Weak transcription	Small Intestine	intestine
6	chr15:58907800-58952000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:58910400-58934000	Weak transcription	Psoas Muscle	Psoas
8	chr15:58911600-58951200	Weak transcription	Fetal Brain Male	brain
9	chr15:58911600-58958000	Weak transcription	Fetal Brain Female	brain
10	chr15:58914200-58957600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:58914600-58957000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:58917000-58959600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:58919800-58959200	Weak transcription	Brain Germinal Matrix	brain
14	chr15:58920200-58946600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:58920200-58957200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr15:58920400-58933000	Weak transcription	Fetal Kidney	kidney
17	chr15:58921000-58957600	Weak transcription	Colonic Mucosa	Colon
18	chr15:58921200-58931000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr15:58921200-58932200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr15:58921200-58932200	Weak transcription	HSMMtube	muscle
21	chr15:58921200-58933000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr15:58921200-58933800	Weak transcription	Colon Smooth Muscle	Colon
23	chr15:58921200-58946400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr15:58921200-58946600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:58921200-58946800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr15:58921200-58949400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr15:58921200-58959600	Weak transcription	Aorta	Aorta
28	chr15:58921200-58968400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr15:58921600-58932200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr15:58921600-58932800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr15:58921600-58933800	Weak transcription	Brain Anterior Caudate	brain
32	chr15:58921600-58933800	Weak transcription	Osteobl	bone
33	chr15:58921600-58942400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr15:58921600-58946600	Weak transcription	Fetal Intestine Small	intestine
35	chr15:58921600-58959200	Weak transcription	NHLF	lung
36	chr15:58921600-58976600	Weak transcription	Right Ventricle	heart
37	chr15:58921800-58932200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr15:58921800-58946400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr15:58921800-58947200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr15:58921800-58970400	Weak transcription	Stomach Mucosa	stomach
41	chr15:58922200-58931600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr15:58922200-58939000	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr15:58922200-58959000	Weak transcription	HUVEC	blood vessel
44	chr15:58922400-58942600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr15:58923400-58942400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr15:58923400-58971800	Weak transcription	Pancreas	Pancrea
47	chr15:58923400-58982800	Weak transcription	Lung	lung
48	chr15:58923800-58933000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr15:58923800-58947400	Weak transcription	Fetal Stomach	stomach
50	chr15:58924000-58931400	Weak transcription	Placenta Amnion	Placenta Amnion

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