Variant report

Variant	rs6494024
Chromosome Location	chr15:58876688-58876689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:58876535-58876837	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:58860510..58864232-chr15:58873033..58877399,5	K562	blood:
2	chr15:58860633..58862696-chr15:58874289..58877097,2	MCF-7	breast:
3	chr15:58868577..58870503-chr15:58875385..58877365,2	K562	blood:

Variant related genes	Relation type
ENSG00000259250	TF binding region

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs16940570	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940574	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940584	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940586	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940602	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940614	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940638	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940723	1.00[EUR][1000 genomes]
rs16940751	1.00[EUR][1000 genomes]
rs16940766	1.00[EUR][1000 genomes]
rs16940768	1.00[EUR][1000 genomes]
rs16940771	1.00[EUR][1000 genomes]
rs16953381	0.99[AFR][1000 genomes]
rs2013878	0.87[AFR][1000 genomes]
rs2414609	1.00[EUR][1000 genomes]
rs4277293	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55939313	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56039925	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56357958	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56935364	1.00[EUR][1000 genomes]
rs56942476	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57083702	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57845422	1.00[EUR][1000 genomes]
rs58937576	1.00[EUR][1000 genomes]
rs61678411	1.00[EUR][1000 genomes]
rs7163948	1.00[EUR][1000 genomes]
rs7164104	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7166901	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7167240	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7168066	1.00[EUR][1000 genomes]
rs7172673	1.00[EUR][1000 genomes]
rs7173048	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7174279	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7175610	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7176715	1.00[EUR][1000 genomes]
rs74016920	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016943	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016946	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016947	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017259	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017261	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017264	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017265	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74017270	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74017281	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74017286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74017293	1.00[EUR][1000 genomes]
rs74017296	1.00[EUR][1000 genomes]
rs74017297	1.00[EUR][1000 genomes]
rs74017298	1.00[EUR][1000 genomes]
rs74017300	1.00[EUR][1000 genomes]
rs74017301	1.00[EUR][1000 genomes]
rs74018920	1.00[EUR][1000 genomes]
rs8025475	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8027618	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8028872	1.00[EUR][1000 genomes]
rs8029869	1.00[EUR][1000 genomes]
rs8031250	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8031412	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8032451	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8033613	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8043275	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs881117	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58874600-58889200	Weak transcription	Small Intestine	intestine
2	chr15:58874800-58877200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr15:58876200-58877200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr15:58876200-58877200	Enhancers	K562	blood
5	chr15:58876600-58878600	Enhancers	HSMMtube	muscle
6	chr15:58876600-58878800	Enhancers	Fetal Thymus	thymus
7	chr15:58876600-58879200	Enhancers	Thymus	Thymus

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