Variant report

Variant	rs8025475
Chromosome Location	chr15:58904755-58904756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58903672..58906413-chr15:58914641..58916719,2	K562	blood:
2	chr15:58898609..58900839-chr15:58904046..58906383,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs16940570	1.00[EUR][1000 genomes]
rs16940574	0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16940584	0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16940586	1.00[EUR][1000 genomes]
rs16940602	0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16940614	1.00[EUR][1000 genomes]
rs16940638	0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16940723	1.00[EUR][1000 genomes]
rs16940751	1.00[EUR][1000 genomes]
rs16940766	1.00[EUR][1000 genomes]
rs16940768	1.00[EUR][1000 genomes]
rs16940771	1.00[EUR][1000 genomes]
rs2013878	0.81[MKK][hapmap];1.00[TSI][hapmap]
rs2414609	1.00[EUR][1000 genomes]
rs4277293	1.00[EUR][1000 genomes]
rs55939313	1.00[EUR][1000 genomes]
rs56039925	1.00[EUR][1000 genomes]
rs56357958	1.00[EUR][1000 genomes]
rs56935364	1.00[EUR][1000 genomes]
rs56942476	1.00[EUR][1000 genomes]
rs57083702	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57845422	1.00[EUR][1000 genomes]
rs58937576	1.00[EUR][1000 genomes]
rs61678411	1.00[EUR][1000 genomes]
rs6494024	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6494025	0.83[YRI][hapmap]
rs7163948	1.00[EUR][1000 genomes]
rs7164104	1.00[EUR][1000 genomes]
rs7166901	1.00[EUR][1000 genomes]
rs7167240	0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7168066	1.00[EUR][1000 genomes]
rs7172673	0.91[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7173048	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7174279	1.00[EUR][1000 genomes]
rs7175610	1.00[EUR][1000 genomes]
rs7176715	1.00[EUR][1000 genomes]
rs74016920	1.00[EUR][1000 genomes]
rs74016943	1.00[EUR][1000 genomes]
rs74016946	1.00[EUR][1000 genomes]
rs74016947	1.00[EUR][1000 genomes]
rs74017259	1.00[EUR][1000 genomes]
rs74017261	1.00[EUR][1000 genomes]
rs74017264	1.00[EUR][1000 genomes]
rs74017265	1.00[EUR][1000 genomes]
rs74017270	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74017281	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74017286	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74017293	1.00[EUR][1000 genomes]
rs74017296	1.00[EUR][1000 genomes]
rs74017297	1.00[EUR][1000 genomes]
rs74017298	1.00[EUR][1000 genomes]
rs74017300	1.00[EUR][1000 genomes]
rs74017301	1.00[EUR][1000 genomes]
rs74018920	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8027618	1.00[EUR][1000 genomes]
rs8028872	1.00[EUR][1000 genomes]
rs8029869	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8031250	0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8031412	1.00[EUR][1000 genomes]
rs8032451	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8033613	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8043275	1.00[EUR][1000 genomes]
rs881117	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1551	chr15:58891639-58936580	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58880600-58920600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:58882600-58907600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:58885800-58906800	Weak transcription	Fetal Brain Male	brain
4	chr15:58887200-58906600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:58887800-58905200	Weak transcription	Brain Germinal Matrix	brain
6	chr15:58888000-58906200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:58888400-58920000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:58889600-58905200	Weak transcription	Fetal Brain Female	brain
9	chr15:58889600-58919800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:58889800-58918800	Weak transcription	Osteobl	bone
11	chr15:58889800-58921000	Weak transcription	Ovary	ovary
12	chr15:58890000-58906200	Weak transcription	Small Intestine	intestine
13	chr15:58890800-58905200	Weak transcription	Brain Anterior Caudate	brain
14	chr15:58891000-58906800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr15:58891400-58959600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr15:58893800-58906200	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr15:58893800-58906200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr15:58894400-58905200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:58894800-58906200	Strong transcription	Primary B cells from cord blood	blood
20	chr15:58894800-58906800	Weak transcription	Psoas Muscle	Psoas
21	chr15:58896600-58905000	Weak transcription	Lung	lung
22	chr15:58897400-58905200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:58897600-58905000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr15:58899200-58905000	Weak transcription	Fetal Muscle Leg	muscle
25	chr15:58899200-58920200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr15:58899600-58906200	Strong transcription	Primary B cells from peripheral blood	blood
27	chr15:58900000-58906000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:58900200-58904800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:58900200-58905000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr15:58900200-58908400	Weak transcription	Hela-S3	cervix
31	chr15:58900400-58906600	Strong transcription	Dnd41	blood
32	chr15:58901000-58904800	Strong transcription	Primary hematopoietic stem cells	blood
33	chr15:58901000-58904800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr15:58901000-58906000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr15:58901000-58906800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr15:58901200-58905400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr15:58901400-58905400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr15:58901400-58906000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr15:58901400-58906000	Strong transcription	GM12878-XiMat	blood
40	chr15:58901400-58918800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr15:58901600-58905600	Strong transcription	HepG2	liver
42	chr15:58901600-58906200	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr15:58901600-58906800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr15:58901600-58906800	Weak transcription	Fetal Heart	heart
45	chr15:58901600-58913400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr15:58902600-58905600	Genic enhancers	Fetal Thymus	thymus
47	chr15:58902600-58906600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr15:58902800-58905000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr15:58902800-58905200	Weak transcription	NHDF-Ad	bronchial
50	chr15:58902800-58911200	Weak transcription	HMEC	breast

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