Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:24575483..24577164-chr3:24577911..24580560,3	K562	blood:
2	chr3:24561814..24563738-chr3:24574454..24576110,2	MCF-7	breast:
3	chr3:24565232..24567953-chr3:24571653..24576721,4	K562	blood:
4	chr3:24575483..24577164-chr3:24577911..24580259,2	K562	blood:
5	chr3:24560064..24565093-chr3:24569358..24577733,9	K562	blood:

Variant related genes	Relation type
ENSG00000265028	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17014779	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17014785	0.82[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17014802	0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17014812	1.00[AMR][1000 genomes]
rs2117875	0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57992030	1.00[AMR][1000 genomes]
rs59006616	1.00[AMR][1000 genomes]
rs59949331	0.85[AMR][1000 genomes]
rs60074554	1.00[AMR][1000 genomes]
rs61670515	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6791260	1.00[AMR][1000 genomes]
rs73139205	1.00[AMR][1000 genomes]
rs73139211	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73139213	1.00[AMR][1000 genomes]
rs73139244	1.00[AMR][1000 genomes]
rs73139256	1.00[AMR][1000 genomes]
rs73141118	1.00[AMR][1000 genomes]
rs73141141	0.85[AMR][1000 genomes]
rs73141154	0.85[AMR][1000 genomes]
rs73141157	0.85[AMR][1000 genomes]
rs73141168	0.85[AMR][1000 genomes]
rs73141171	0.85[AMR][1000 genomes]
rs73152159	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73152164	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24566200-24591800	Weak transcription	Psoas Muscle	Psoas
2	chr3:24573400-24576800	Weak transcription	Stomach Mucosa	stomach
3	chr3:24575000-24575600	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr3:24575200-24575600	Flanking Active TSS	Colon Smooth Muscle	Colon
5	chr3:24575200-24575600	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr3:24575200-24575600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr3:24575400-24577600	Weak transcription	Rectal Smooth Muscle	rectum

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