Variant report

Variant	rs73139205
Chromosome Location	chr3:24581717-24581718
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17014779	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17014781	1.00[AMR][1000 genomes]
rs17014785	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17014802	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17014812	1.00[AMR][1000 genomes]
rs2117875	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57992030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59006616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59949331	0.85[AMR][1000 genomes]
rs60074554	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61670515	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6791260	1.00[AMR][1000 genomes]
rs73139211	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73139213	1.00[AMR][1000 genomes]
rs73139244	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73139256	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141118	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141141	0.85[AMR][1000 genomes]
rs73141154	0.85[AMR][1000 genomes]
rs73141157	0.85[AMR][1000 genomes]
rs73141168	0.85[AMR][1000 genomes]
rs73141171	0.85[AMR][1000 genomes]
rs73152159	1.00[AMR][1000 genomes]
rs73152164	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24566200-24591800	Weak transcription	Psoas Muscle	Psoas
2	chr3:24580600-24581800	Weak transcription	Fetal Lung	lung
3	chr3:24580600-24582600	Enhancers	Colon Smooth Muscle	Colon
4	chr3:24580800-24581800	Weak transcription	Aorta	Aorta
5	chr3:24580800-24586400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:24580800-24587200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:24581000-24582000	Weak transcription	Fetal Heart	heart
8	chr3:24581600-24582200	Enhancers	Rectal Smooth Muscle	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links