Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:24561877..24564685-chr3:24585001..24587984,3	K562	blood:
2	chr3:24563185..24564896-chr3:24586484..24588890,2	K562	blood:
3	chr3:24535527..24537870-chr3:24586121..24588310,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17014779	0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17014781	0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17014785	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17014802	0.84[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17014812	1.00[AMR][1000 genomes]
rs57992030	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59006616	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59949331	0.85[AMR][1000 genomes]
rs60074554	1.00[AMR][1000 genomes]
rs61670515	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6791260	1.00[AMR][1000 genomes]
rs73139205	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73139211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73139213	1.00[AMR][1000 genomes]
rs73139244	1.00[AMR][1000 genomes]
rs73139256	1.00[AMR][1000 genomes]
rs73141118	1.00[AMR][1000 genomes]
rs73141141	0.85[AMR][1000 genomes]
rs73141154	0.85[AMR][1000 genomes]
rs73141157	0.85[AMR][1000 genomes]
rs73141168	0.85[AMR][1000 genomes]
rs73141171	0.85[AMR][1000 genomes]
rs73152159	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73152164	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24566200-24591800	Weak transcription	Psoas Muscle	Psoas
2	chr3:24580800-24587200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:24582600-24588400	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:24586200-24588200	Enhancers	Fetal Lung	lung
5	chr3:24586400-24586800	Enhancers	Skeletal Muscle Female	skeletal muscle

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