Variant report
| Variant | rs60074554 |
|---|---|
| Chromosome Location | chr3:24613367-24613368 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:23957479..23960111-chr3:24612993..24615099,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000174748 | Chromatin interaction |
| ENSG00000197885 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs17014779 | 1.00[AMR][1000 genomes] |
| rs17014781 | 1.00[AMR][1000 genomes] |
| rs17014785 | 1.00[AMR][1000 genomes] |
| rs17014802 | 1.00[AMR][1000 genomes] |
| rs17014812 | 1.00[AMR][1000 genomes] |
| rs2117875 | 1.00[AMR][1000 genomes] |
| rs57992030 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59006616 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59949331 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs61670515 | 1.00[AMR][1000 genomes] |
| rs6791260 | 1.00[AMR][1000 genomes] |
| rs73139205 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73139211 | 1.00[AMR][1000 genomes] |
| rs73139213 | 1.00[AMR][1000 genomes] |
| rs73139244 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73139256 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73141118 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73141141 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs73141154 | 0.85[AMR][1000 genomes] |
| rs73141157 | 0.85[AMR][1000 genomes] |
| rs73141168 | 0.85[AMR][1000 genomes] |
| rs73141171 | 0.85[AMR][1000 genomes] |
| rs73152159 | 1.00[AMR][1000 genomes] |
| rs73152164 | 0.87[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834641 | chr3:24465862-24633738 | Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv834642 | chr3:24475558-24640593 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv1012975 | chr3:24500706-24615644 | Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 4 | nsv999384 | chr3:24525345-24656873 | Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
