Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NR1D2-5	chr3:24597325-24597950	NONHSAT088702

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1354601	1.00[MEX][hapmap]
rs17014779	0.84[ASW][hapmap];1.00[AMR][1000 genomes]
rs17014781	1.00[AMR][1000 genomes]
rs17014785	1.00[AMR][1000 genomes]
rs17014802	0.86[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs2117875	1.00[AMR][1000 genomes]
rs4858615	1.00[MEX][hapmap]
rs4858618	1.00[MEX][hapmap]
rs57992030	1.00[AMR][1000 genomes]
rs59006616	1.00[AMR][1000 genomes]
rs59949331	0.85[AMR][1000 genomes]
rs60074554	1.00[AMR][1000 genomes]
rs61670515	1.00[AMR][1000 genomes]
rs6791260	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs73139205	1.00[AMR][1000 genomes]
rs73139211	1.00[AMR][1000 genomes]
rs73139213	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73139244	1.00[AMR][1000 genomes]
rs73139256	1.00[AMR][1000 genomes]
rs73141118	1.00[AMR][1000 genomes]
rs73141141	0.85[AMR][1000 genomes]
rs73141154	0.85[AMR][1000 genomes]
rs73141157	0.85[AMR][1000 genomes]
rs73141168	0.85[AMR][1000 genomes]
rs73141171	0.85[AMR][1000 genomes]
rs73152159	1.00[AMR][1000 genomes]
rs73152164	0.87[AMR][1000 genomes]
rs737365	1.00[MEX][hapmap]
rs7628779	1.00[MEX][hapmap]
rs9819977	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24597400-24597800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:24597400-24597800	Enhancers	Placenta	Placenta

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