Variant report

Variant	rs73141141
Chromosome Location	chr3:24628685-24628686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17014779	0.85[AMR][1000 genomes]
rs17014781	0.85[AMR][1000 genomes]
rs17014785	0.85[AMR][1000 genomes]
rs17014802	0.85[AMR][1000 genomes]
rs17014812	0.85[AMR][1000 genomes]
rs2117875	0.85[AMR][1000 genomes]
rs57992030	0.85[AMR][1000 genomes]
rs59006616	0.85[AMR][1000 genomes]
rs59393738	0.85[AMR][1000 genomes]
rs59949331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60074554	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60182949	0.85[AMR][1000 genomes]
rs60506138	0.85[AMR][1000 genomes]
rs61670515	0.85[AMR][1000 genomes]
rs6791260	0.85[AMR][1000 genomes]
rs73139205	0.85[AMR][1000 genomes]
rs73139211	0.85[AMR][1000 genomes]
rs73139213	0.85[AMR][1000 genomes]
rs73139244	0.85[AMR][1000 genomes]
rs73139256	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73141118	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73141130	0.85[AMR][1000 genomes]
rs73141137	0.85[AMR][1000 genomes]
rs73141154	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141157	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141168	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141171	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73152159	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24618000-24629600	Weak transcription	Right Atrium	heart
2	chr3:24621200-24633400	Weak transcription	K562	blood
3	chr3:24624000-24629200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:24625000-24629400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:24625000-24629400	Weak transcription	Psoas Muscle	Psoas
6	chr3:24625000-24630000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:24625200-24629800	Weak transcription	Stomach Mucosa	stomach
8	chr3:24628000-24628800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:24628200-24629600	Enhancers	Fetal Intestine Small	intestine
10	chr3:24628400-24628800	Enhancers	Left Ventricle	heart
11	chr3:24628400-24628800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr3:24628600-24629400	Weak transcription	Fetal Intestine Large	intestine
13	chr3:24628600-24630000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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