Variant report
| Variant | rs73139244 |
|---|---|
| Chromosome Location | chr3:24604201-24604202 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:24599129..24600747-chr3:24601001..24605288,3 | K562 | blood: | |
| 2 | chr3:24604131..24605973-chr3:24617844..24619674,2 | K562 | blood: | |
| 3 | chr3:24603154..24605319-chr3:24606297..24608578,2 | K562 | blood: | |
| 4 | chr3:24603154..24605809-chr3:24606160..24608578,3 | K562 | blood: | |
| 5 | chr3:24598839..24600679-chr3:24603788..24605364,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs17014779 | 1.00[AMR][1000 genomes] |
| rs17014781 | 1.00[AMR][1000 genomes] |
| rs17014785 | 1.00[AMR][1000 genomes] |
| rs17014802 | 1.00[AMR][1000 genomes] |
| rs17014812 | 1.00[AMR][1000 genomes] |
| rs2117875 | 1.00[AMR][1000 genomes] |
| rs57992030 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59006616 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59949331 | 0.85[AMR][1000 genomes] |
| rs60074554 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61670515 | 1.00[AMR][1000 genomes] |
| rs6791260 | 1.00[AMR][1000 genomes] |
| rs73139205 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73139211 | 1.00[AMR][1000 genomes] |
| rs73139213 | 1.00[AMR][1000 genomes] |
| rs73139256 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73141118 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73141141 | 0.85[AMR][1000 genomes] |
| rs73141154 | 0.85[AMR][1000 genomes] |
| rs73141157 | 0.85[AMR][1000 genomes] |
| rs73141168 | 0.85[AMR][1000 genomes] |
| rs73141171 | 0.85[AMR][1000 genomes] |
| rs73152159 | 1.00[AMR][1000 genomes] |
| rs73152164 | 0.87[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834641 | chr3:24465862-24633738 | Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv834642 | chr3:24475558-24640593 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv1012975 | chr3:24500706-24615644 | Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 4 | nsv999384 | chr3:24525345-24656873 | Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:24604200-24605000 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
| 2 | chr3:24604200-24605000 | Enhancers | K562 | blood |
