Variant report

Variant	rs17106169
Chromosome Location	chr14:69183492-69183493
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69183344..69185118-chr14:69281326..69283453,2	K562	blood:
2	chr14:69183235..69184183-chr14:69255274..69256212,3	MCF-7	breast:
3	chr14:69179231..69184883-chr14:69249659..69253927,5	MCF-7	breast:
4	chr14:69177353..69180926-chr14:69182112..69186555,4	MCF-7	breast:
5	chr14:69182476..69185468-chr14:69260401..69263211,2	MCF-7	breast:
6	chr14:69182299..69185651-chr14:69257654..69260902,5	K562	blood:
7	chr14:69182016..69183810-chr14:69261236..69263923,2	MCF-7	breast:
8	chr14:69181891..69185651-chr14:69255662..69261026,8	K562	blood:
9	chr14:69181127..69183744-chr14:69184371..69186428,2	K562	blood:
10	chr14:69182928..69185621-chr14:69189406..69191992,2	MCF-7	breast:
11	chr14:69181127..69183610-chr14:69184552..69186676,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12147980	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1475036	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106195	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56762713	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56888100	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56961567	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57414862	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57744629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61387441	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61562519	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72625664	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003773	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9646162	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69173600-69194200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:69173600-69196400	Weak transcription	Right Ventricle	heart
3	chr14:69173800-69184200	Weak transcription	Ovary	ovary
4	chr14:69176600-69189400	Weak transcription	Pancreas	Pancrea
5	chr14:69177400-69184200	Enhancers	Placenta	Placenta
6	chr14:69177800-69184000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr14:69179000-69183600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr14:69180000-69185200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:69180200-69185400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr14:69180800-69185200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr14:69180800-69185200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr14:69180800-69186200	Weak transcription	Primary T cells from cord blood	blood
13	chr14:69180800-69186200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr14:69181000-69185200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr14:69181000-69186000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr14:69181000-69191400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr14:69181000-69195200	Weak transcription	Spleen	Spleen
18	chr14:69181200-69184800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr14:69181600-69184400	Enhancers	Fetal Intestine Small	intestine
20	chr14:69181800-69185000	Weak transcription	NHDF-Ad	bronchial
21	chr14:69181800-69185800	Enhancers	HepG2	liver
22	chr14:69182000-69184200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr14:69182000-69202600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr14:69182200-69183600	Weak transcription	Fetal Muscle Leg	muscle
25	chr14:69182200-69185000	Weak transcription	Osteobl	bone
26	chr14:69182200-69185200	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr14:69182200-69191200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr14:69182400-69185200	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr14:69182600-69185200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr14:69183200-69183600	Enhancers	Stomach Mucosa	stomach
31	chr14:69183400-69183800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr14:69183400-69184400	Enhancers	Fetal Intestine Large	intestine
33	chr14:69183400-69184800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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