Variant report

Variant	rs56888100
Chromosome Location	chr14:69187725-69187726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69186666..69188197-chr14:69195401..69198346,2	K562	blood:
2	chr14:69186631..69190079-chr14:69260120..69263014,4	K562	blood:
3	chr14:69183888..69188009-chr14:69213725..69217312,4	K562	blood:
4	chr14:69185412..69187789-chr14:69192194..69193757,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12147980	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1475036	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106169	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106182	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56762713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56961567	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57414862	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57744629	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61387441	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61562519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72625664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8003773	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9646162	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69173600-69194200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:69173600-69196400	Weak transcription	Right Ventricle	heart
3	chr14:69176600-69189400	Weak transcription	Pancreas	Pancrea
4	chr14:69181000-69191400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:69181000-69195200	Weak transcription	Spleen	Spleen
6	chr14:69182000-69202600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr14:69182200-69191200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:69184200-69188600	Weak transcription	Placenta	Placenta
9	chr14:69184400-69188400	Weak transcription	Fetal Intestine Large	intestine
10	chr14:69184800-69188800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr14:69185800-69188400	Weak transcription	HepG2	liver
12	chr14:69187000-69187800	Weak transcription	Ovary	ovary
13	chr14:69187000-69194200	Weak transcription	HUVEC	blood vessel
14	chr14:69187200-69187800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr14:69187200-69187800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
16	chr14:69187200-69187800	Enhancers	K562	blood
17	chr14:69187400-69188200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr14:69187400-69189000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr14:69187400-69200000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr14:69187600-69189800	Weak transcription	Small Intestine	intestine
21	chr14:69187600-69192400	Enhancers	Fetal Intestine Small	intestine

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