Variant report

Variant	rs57744629
Chromosome Location	chr14:69181138-69181139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69179231..69184883-chr14:69249659..69253927,5	MCF-7	breast:
2	chr14:69170086..69173238-chr14:69180375..69182388,3	MCF-7	breast:
3	chr14:69171674..69175443-chr14:69177716..69181490,3	K562	blood:
4	chr14:69175661..69178437-chr14:69179324..69182008,2	K562	blood:
5	chr14:69181127..69183744-chr14:69184371..69186428,2	K562	blood:
6	chr14:69180920..69183401-chr14:69256192..69258738,2	MCF-7	breast:
7	chr14:69181127..69183610-chr14:69184552..69186676,3	K562	blood:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12147980	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1475036	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17106169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17106170	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17106182	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17106195	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56762713	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56888100	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56961567	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57414862	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61387441	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61562519	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72625664	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8003773	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9646162	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69173600-69194200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:69173600-69196400	Weak transcription	Right Ventricle	heart
3	chr14:69173800-69184200	Weak transcription	Ovary	ovary
4	chr14:69174000-69181600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr14:69174000-69181800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:69175000-69181600	Weak transcription	Adipose Nuclei	Adipose
7	chr14:69176600-69189400	Weak transcription	Pancreas	Pancrea
8	chr14:69177400-69181200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr14:69177400-69184200	Enhancers	Placenta	Placenta
10	chr14:69177800-69184000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr14:69178000-69182000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr14:69178600-69183400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:69179000-69183600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr14:69179200-69181600	Weak transcription	Fetal Intestine Small	intestine
15	chr14:69179200-69181800	Weak transcription	Fetal Intestine Large	intestine
16	chr14:69179200-69183200	Weak transcription	Stomach Mucosa	stomach
17	chr14:69179600-69182600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:69180000-69181600	Weak transcription	Fetal Thymus	thymus
19	chr14:69180000-69182600	Enhancers	K562	blood
20	chr14:69180000-69185200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr14:69180200-69181200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr14:69180200-69181800	Weak transcription	HepG2	liver
23	chr14:69180200-69185400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr14:69180400-69182200	Enhancers	Fetal Muscle Leg	muscle
25	chr14:69180600-69181200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr14:69180600-69181600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr14:69180800-69181200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr14:69180800-69181800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:69180800-69181800	Weak transcription	NHEK	skin
30	chr14:69180800-69185200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr14:69180800-69185200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr14:69180800-69186200	Weak transcription	Primary T cells from cord blood	blood
33	chr14:69180800-69186200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr14:69181000-69182600	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr14:69181000-69183400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr14:69181000-69185200	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr14:69181000-69186000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr14:69181000-69191400	Weak transcription	Fetal Muscle Trunk	muscle
39	chr14:69181000-69195200	Weak transcription	Spleen	Spleen

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