Variant report

Variant	rs72625664
Chromosome Location	chr14:69186052-69186053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69177353..69180926-chr14:69182112..69186555,4	MCF-7	breast:
2	chr14:69185841..69187521-chr14:69260406..69261940,2	K562	blood:
3	chr14:69185847..69187659-chr14:69204580..69206147,2	K562	blood:
4	chr14:69181127..69183744-chr14:69184371..69186428,2	K562	blood:
5	chr14:69183888..69188009-chr14:69213725..69217312,4	K562	blood:
6	chr14:69181127..69183610-chr14:69184552..69186676,3	K562	blood:
7	chr14:69185412..69187789-chr14:69192194..69193757,2	MCF-7	breast:
8	chr14:69027252..69028985-chr14:69183923..69186800,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12147980	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1475036	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106169	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106182	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56762713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56888100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56961567	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57414862	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57744629	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61387441	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61562519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8003773	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9646162	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69173600-69194200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:69173600-69196400	Weak transcription	Right Ventricle	heart
3	chr14:69176600-69189400	Weak transcription	Pancreas	Pancrea
4	chr14:69180800-69186200	Weak transcription	Primary T cells from cord blood	blood
5	chr14:69180800-69186200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr14:69181000-69191400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr14:69181000-69195200	Weak transcription	Spleen	Spleen
8	chr14:69182000-69202600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr14:69182200-69191200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:69184200-69188600	Weak transcription	Placenta	Placenta
11	chr14:69184400-69187600	Weak transcription	Fetal Intestine Small	intestine
12	chr14:69184400-69188400	Weak transcription	Fetal Intestine Large	intestine
13	chr14:69184800-69187000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr14:69184800-69188800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr14:69185000-69187200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr14:69185200-69186600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr14:69185200-69186800	Enhancers	K562	blood
18	chr14:69185200-69187000	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr14:69185200-69187200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr14:69185200-69187400	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr14:69185400-69187200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr14:69185600-69187200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr14:69185800-69187200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr14:69185800-69188400	Weak transcription	HepG2	liver
25	chr14:69186000-69187000	Enhancers	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links