Variant report

Variant	rs9646162
Chromosome Location	chr14:69178977-69178978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69163475..69166376-chr14:69176885..69179695,2	K562	blood:
2	chr14:69177394..69179391-chr14:69252798..69254946,2	K562	blood:
3	chr14:69177670..69179717-chr14:69259867..69262497,2	K562	blood:
4	chr14:69171674..69175443-chr14:69177716..69181490,3	K562	blood:
5	chr14:69175919..69179452-chr14:69252048..69254432,3	MCF-7	breast:
6	chr14:69125055..69127745-chr14:69178305..69180249,2	MCF-7	breast:
7	chr14:69177353..69180926-chr14:69182112..69186555,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12147980	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1475036	1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17106169	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17106170	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17106182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17106195	1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56762713	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56888100	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56961567	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57414862	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57744629	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61387441	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61562519	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72625664	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8003773	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69171800-69179800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:69173400-69179800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:69173600-69179800	Weak transcription	Right Atrium	heart
4	chr14:69173600-69194200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr14:69173600-69196400	Weak transcription	Right Ventricle	heart
6	chr14:69173800-69179000	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:69173800-69180600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:69173800-69180600	Weak transcription	NHEK	skin
9	chr14:69173800-69184200	Weak transcription	Ovary	ovary
10	chr14:69174000-69181600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr14:69174000-69181800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:69175000-69181600	Weak transcription	Adipose Nuclei	Adipose
13	chr14:69176000-69180800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:69176600-69189400	Weak transcription	Pancreas	Pancrea
15	chr14:69177200-69181000	Enhancers	Primary T cells fromperipheralblood	blood
16	chr14:69177400-69181200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr14:69177400-69184200	Enhancers	Placenta	Placenta
18	chr14:69177600-69179200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:69177600-69179600	Enhancers	HepG2	liver
20	chr14:69177600-69180000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr14:69177600-69180200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr14:69177600-69180800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr14:69177800-69179200	Enhancers	Liver	Liver
24	chr14:69177800-69179200	Enhancers	Stomach Mucosa	stomach
25	chr14:69177800-69180800	Enhancers	Primary T cells from cord blood	blood
26	chr14:69177800-69180800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr14:69177800-69184000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr14:69178000-69180000	Enhancers	Fetal Thymus	thymus
29	chr14:69178000-69180200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr14:69178000-69180400	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr14:69178000-69180600	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr14:69178000-69181000	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr14:69178000-69182000	Enhancers	Placenta Amnion	Placenta Amnion
34	chr14:69178200-69180800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr14:69178200-69180800	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr14:69178400-69179200	Enhancers	Fetal Intestine Large	intestine
37	chr14:69178400-69179800	Weak transcription	Left Ventricle	heart
38	chr14:69178400-69181000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr14:69178600-69179000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr14:69178600-69179200	Enhancers	Primary hematopoietic stem cells	blood
41	chr14:69178600-69179200	Enhancers	Fetal Intestine Small	intestine
42	chr14:69178600-69179400	Weak transcription	Spleen	Spleen
43	chr14:69178600-69179800	Weak transcription	Lung	lung
44	chr14:69178600-69183400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr14:69178800-69179000	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr14:69178800-69179200	Enhancers	Fetal Lung	lung
47	chr14:69178800-69179600	Weak transcription	Fetal Muscle Trunk	muscle
48	chr14:69178800-69179800	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links