Variant report

Variant	rs17127762
Chromosome Location	chr14:55156650-55156651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55152764..55154523-chr14:55154853..55157005,2	K562	blood:
2	chr14:55030986..55034597-chr14:55149499..55156969,7	K562	blood:
3	chr14:55155000..55157258-chr14:55177192..55179542,2	K562	blood:
4	chr14:55150913..55152585-chr14:55156483..55158772,2	K562	blood:
5	chr14:55030986..55034365-chr14:55154855..55157682,3	K562	blood:
6	chr14:55156355..55158151-chr14:55161191..55162773,2	K562	blood:
7	chr14:55037697..55040991-chr14:55155490..55158555,3	MCF-7	breast:
8	chr14:55140902..55144025-chr14:55156540..55160484,3	K562	blood:
9	chr14:55042765..55044958-chr14:55156029..55158502,2	K562	blood:
10	chr14:55151370..55153838-chr14:55155810..55159245,4	MCF-7	breast:
11	chr14:55156439..55158580-chr14:55239567..55242066,2	K562	blood:
12	chr14:55030217..55037454-chr14:55155410..55162836,15	MCF-7	breast:
13	chr14:55030759..55039196-chr14:55155352..55168435,18	MCF-7	breast:
14	chr14:55156301..55159085-chr14:55171921..55174252,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CGRRF1-3	chr14:55156464-55156775	NONHSAT036970

No data

Variant related genes	Relation type
ENSG00000020577	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17127766	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17127773	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17127777	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17127780	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17127809	1.00[AMR][1000 genomes]
rs17127829	1.00[AMR][1000 genomes]
rs74049561	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74049563	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74049565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74049567	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8013701	1.00[AMR][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55120000-55179400	Weak transcription	Fetal Intestine Small	intestine
2	chr14:55141200-55157400	Weak transcription	HepG2	liver
3	chr14:55144400-55157600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:55149200-55157600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr14:55149600-55158000	Weak transcription	K562	blood
6	chr14:55151600-55157400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:55151600-55157800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:55151800-55157600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:55151800-55165200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr14:55152200-55157800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr14:55152400-55157600	Weak transcription	Spleen	Spleen
12	chr14:55152800-55157600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr14:55152800-55157600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr14:55152800-55157800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr14:55152800-55178400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr14:55153000-55157400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr14:55153000-55157600	Weak transcription	Lung	lung
18	chr14:55153000-55157800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr14:55153000-55157800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr14:55153000-55174600	Weak transcription	Colonic Mucosa	Colon
21	chr14:55153000-55197000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr14:55153200-55161400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:55153400-55158000	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr14:55153400-55158400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr14:55153400-55158600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr14:55153600-55161400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr14:55153600-55161600	Weak transcription	NHEK	skin
28	chr14:55153800-55158600	Weak transcription	Fetal Stomach	stomach
29	chr14:55153800-55163000	Weak transcription	HMEC	breast
30	chr14:55154200-55158000	Weak transcription	Brain Substantia Nigra	brain
31	chr14:55154200-55158600	Weak transcription	Osteobl	bone
32	chr14:55154200-55161200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr14:55154200-55165000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr14:55154400-55157600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr14:55154400-55157600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr14:55154400-55158000	Weak transcription	Liver	Liver
37	chr14:55154400-55158600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr14:55154400-55158800	Weak transcription	Brain Hippocampus Middle	brain
39	chr14:55154400-55178800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr14:55154600-55157600	Weak transcription	Adipose Nuclei	Adipose
41	chr14:55154600-55158400	Weak transcription	Ovary	ovary
42	chr14:55154600-55165400	Weak transcription	Placenta	Placenta
43	chr14:55154600-55178600	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr14:55154800-55178600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr14:55155000-55157200	Weak transcription	HUVEC	blood vessel
46	chr14:55155000-55157400	Weak transcription	Fetal Muscle Leg	muscle
47	chr14:55155000-55157600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr14:55155000-55157600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr14:55155000-55158000	Weak transcription	NHDF-Ad	bronchial
50	chr14:55155000-55158800	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links