Variant report

Variant	rs17127773
Chromosome Location	chr14:55158493-55158494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55031950..55032934-chr14:55158020..55159038,3	MCF-7	breast:
2	chr14:55150913..55152585-chr14:55156483..55158772,2	K562	blood:
3	chr14:55158430..55158963-chr14:55239590..55240151,2	MCF-7	breast:
4	chr14:55037697..55040991-chr14:55155490..55158555,3	MCF-7	breast:
5	chr14:55140196..55140744-chr14:55158139..55158942,2	MCF-7	breast:
6	chr14:55035490..55037978-chr14:55158318..55160767,2	K562	blood:
7	chr14:55158325..55158986-chr14:55189382..55190113,2	MCF-7	breast:
8	chr14:55038772..55039334-chr14:55158009..55158573,3	MCF-7	breast:
9	chr14:55038796..55039752-chr14:55158001..55158894,7	MCF-7	breast:
10	chr14:55125925..55127588-chr14:55158013..55160688,2	MCF-7	breast:
11	chr14:55157969..55160953-chr14:55201811..55203780,2	MCF-7	breast:
12	chr14:55140902..55144025-chr14:55156540..55160484,3	K562	blood:
13	chr14:55031101..55031841-chr14:55158085..55158665,2	MCF-7	breast:
14	chr14:55042765..55044958-chr14:55156029..55158502,2	K562	blood:
15	chr14:55158003..55159901-chr14:55164880..55166832,2	K562	blood:
16	chr14:55151370..55153838-chr14:55155810..55159245,4	MCF-7	breast:
17	chr14:55156439..55158580-chr14:55239567..55242066,2	K562	blood:
18	chr14:55031991..55032974-chr14:55157966..55158670,2	MCF-7	breast:
19	chr14:55030607..55031714-chr14:55158028..55159009,4	MCF-7	breast:
20	chr14:55034172..55035071-chr14:55158011..55158919,2	MCF-7	breast:
21	chr14:55030217..55037454-chr14:55155410..55162836,15	MCF-7	breast:
22	chr14:55030759..55039196-chr14:55155352..55168435,18	MCF-7	breast:
23	chr14:55158040..55161012-chr14:55176394..55179136,2	MCF-7	breast:
24	chr14:55156301..55159085-chr14:55171921..55174252,3	K562	blood:
25	chr14:55145858..55147827-chr14:55158214..55161062,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000020577	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17127762	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17127766	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17127777	0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17127780	0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17127809	1.00[AMR][1000 genomes]
rs17127829	1.00[AMR][1000 genomes]
rs74049561	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74049563	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74049565	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74049567	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8013701	1.00[AMR][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55120000-55179400	Weak transcription	Fetal Intestine Small	intestine
2	chr14:55151800-55165200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:55152800-55178400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr14:55153000-55174600	Weak transcription	Colonic Mucosa	Colon
5	chr14:55153000-55197000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:55153200-55161400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:55153400-55158600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr14:55153600-55161400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:55153600-55161600	Weak transcription	NHEK	skin
10	chr14:55153800-55158600	Weak transcription	Fetal Stomach	stomach
11	chr14:55153800-55163000	Weak transcription	HMEC	breast
12	chr14:55154200-55158600	Weak transcription	Osteobl	bone
13	chr14:55154200-55161200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr14:55154200-55165000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr14:55154400-55158600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:55154400-55158800	Weak transcription	Brain Hippocampus Middle	brain
17	chr14:55154400-55178800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr14:55154600-55165400	Weak transcription	Placenta	Placenta
19	chr14:55154600-55178600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr14:55154800-55178600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr14:55155000-55158800	Weak transcription	Fetal Lung	lung
22	chr14:55155000-55159400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr14:55155200-55158800	Weak transcription	HSMM	muscle
24	chr14:55155200-55165400	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr14:55155400-55158600	Weak transcription	HSMMtube	muscle
26	chr14:55155400-55179000	Weak transcription	NH-A	brain
27	chr14:55156000-55163000	Enhancers	Fetal Heart	heart
28	chr14:55156400-55159400	Enhancers	Right Atrium	heart
29	chr14:55156400-55159600	Enhancers	Left Ventricle	heart
30	chr14:55156600-55158600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr14:55156800-55161000	Weak transcription	Aorta	Aorta
32	chr14:55157200-55158600	Enhancers	HUVEC	blood vessel
33	chr14:55157200-55159200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr14:55157200-55159400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr14:55157400-55159000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr14:55157400-55159200	Enhancers	HepG2	liver
37	chr14:55157400-55159400	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr14:55157400-55159400	Enhancers	Rectal Smooth Muscle	rectum
39	chr14:55157400-55159600	Enhancers	Fetal Muscle Leg	muscle
40	chr14:55157600-55159000	Enhancers	NHLF	lung
41	chr14:55157600-55159200	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr14:55157600-55159400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr14:55157600-55159400	Enhancers	Spleen	Spleen
44	chr14:55157600-55159600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr14:55157600-55159600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr14:55157600-55159600	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr14:55157800-55158800	Weak transcription	Stomach Smooth Muscle	stomach
48	chr14:55157800-55159000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr14:55157800-55159400	Enhancers	Fetal Muscle Trunk	muscle
50	chr14:55158000-55158600	Enhancers	Liver	Liver

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