Variant report

Variant	rs17127777
Chromosome Location	chr14:55159238-55159239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55158722..55162150-chr14:55187455..55191163,3	K562	blood:
2	chr14:55152624..55154983-chr14:55158609..55161156,2	K562	blood:
3	chr14:55035490..55037978-chr14:55158318..55160767,2	K562	blood:
4	chr14:55125925..55127588-chr14:55158013..55160688,2	MCF-7	breast:
5	chr14:55157969..55160953-chr14:55201811..55203780,2	MCF-7	breast:
6	chr14:55140902..55144025-chr14:55156540..55160484,3	K562	blood:
7	chr14:55158003..55159901-chr14:55164880..55166832,2	K562	blood:
8	chr14:55151370..55153838-chr14:55155810..55159245,4	MCF-7	breast:
9	chr14:55030217..55037454-chr14:55155410..55162836,15	MCF-7	breast:
10	chr14:55030759..55039196-chr14:55155352..55168435,18	MCF-7	breast:
11	chr14:55158040..55161012-chr14:55176394..55179136,2	MCF-7	breast:
12	chr14:55145858..55147827-chr14:55158214..55161062,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000020577	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17127762	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17127766	0.88[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17127773	0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17127780	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17127809	1.00[AMR][1000 genomes]
rs17127829	1.00[AMR][1000 genomes]
rs74049561	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74049563	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74049565	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74049567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8013701	1.00[AMR][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55120000-55179400	Weak transcription	Fetal Intestine Small	intestine
2	chr14:55151800-55165200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:55152800-55178400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr14:55153000-55174600	Weak transcription	Colonic Mucosa	Colon
5	chr14:55153000-55197000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:55153200-55161400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:55153600-55161400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:55153600-55161600	Weak transcription	NHEK	skin
9	chr14:55153800-55163000	Weak transcription	HMEC	breast
10	chr14:55154200-55161200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr14:55154200-55165000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:55154400-55178800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:55154600-55165400	Weak transcription	Placenta	Placenta
14	chr14:55154600-55178600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr14:55154800-55178600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr14:55155000-55159400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr14:55155200-55165400	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr14:55155400-55179000	Weak transcription	NH-A	brain
19	chr14:55156000-55163000	Enhancers	Fetal Heart	heart
20	chr14:55156400-55159400	Enhancers	Right Atrium	heart
21	chr14:55156400-55159600	Enhancers	Left Ventricle	heart
22	chr14:55156800-55161000	Weak transcription	Aorta	Aorta
23	chr14:55157200-55159400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr14:55157400-55159400	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr14:55157400-55159400	Enhancers	Rectal Smooth Muscle	rectum
26	chr14:55157400-55159600	Enhancers	Fetal Muscle Leg	muscle
27	chr14:55157600-55159400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr14:55157600-55159400	Enhancers	Spleen	Spleen
29	chr14:55157600-55159600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr14:55157600-55159600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr14:55157600-55159600	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr14:55157800-55159400	Enhancers	Fetal Muscle Trunk	muscle
33	chr14:55158000-55159400	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr14:55158000-55159400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr14:55158000-55159400	Enhancers	Brain Anterior Caudate	brain
36	chr14:55158000-55159400	Enhancers	K562	blood
37	chr14:55158000-55159400	Enhancers	NHDF-Ad	bronchial
38	chr14:55158000-55159800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr14:55158000-55165400	Weak transcription	Lung	lung
40	chr14:55158000-55168800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr14:55158200-55159400	Enhancers	Adipose Nuclei	Adipose
42	chr14:55158200-55160400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:55158200-55160600	Weak transcription	Psoas Muscle	Psoas
44	chr14:55158200-55161400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr14:55158200-55161400	Weak transcription	Right Ventricle	heart
46	chr14:55158200-55163800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr14:55158200-55163800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr14:55158200-55165200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr14:55158200-55165600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr14:55158200-55165800	Weak transcription	Placenta Amnion	Placenta Amnion

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