Variant report

Variant	rs17127780
Chromosome Location	chr14:55162856-55162857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55160476..55163450-chr14:55181976..55184386,2	K562	blood:
2	chr14:55160231..55162870-chr14:55164984..55167932,2	MCF-7	breast:
3	chr14:55161720..55164430-chr14:55164474..55166238,2	K562	blood:
4	chr14:55030759..55039196-chr14:55155352..55168435,18	MCF-7	breast:

Variant related genes	Relation type
ENSG00000020577	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17127762	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17127766	0.88[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17127773	0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17127777	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17127809	1.00[AMR][1000 genomes]
rs17127829	1.00[AMR][1000 genomes]
rs74049561	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74049563	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74049565	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74049567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8013701	1.00[AMR][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55120000-55179400	Weak transcription	Fetal Intestine Small	intestine
2	chr14:55151800-55165200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:55152800-55178400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr14:55153000-55174600	Weak transcription	Colonic Mucosa	Colon
5	chr14:55153000-55197000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:55153800-55163000	Weak transcription	HMEC	breast
7	chr14:55154200-55165000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:55154400-55178800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:55154600-55165400	Weak transcription	Placenta	Placenta
10	chr14:55154600-55178600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr14:55154800-55178600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr14:55155200-55165400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr14:55155400-55179000	Weak transcription	NH-A	brain
14	chr14:55156000-55163000	Enhancers	Fetal Heart	heart
15	chr14:55158000-55165400	Weak transcription	Lung	lung
16	chr14:55158000-55168800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:55158200-55163800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:55158200-55163800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:55158200-55165200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr14:55158200-55165600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr14:55158200-55165800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr14:55158200-55170200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr14:55158600-55163000	Weak transcription	Liver	Liver
24	chr14:55158600-55163800	Weak transcription	HUVEC	blood vessel
25	chr14:55159000-55163800	Weak transcription	Brain Substantia Nigra	brain
26	chr14:55159000-55165200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:55159000-55165200	Weak transcription	NHLF	lung
28	chr14:55159200-55165200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr14:55159200-55165200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:55159200-55165200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr14:55159200-55174400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr14:55159400-55163600	Weak transcription	Adipose Nuclei	Adipose
33	chr14:55159400-55163800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr14:55159400-55163800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr14:55159400-55164200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr14:55159400-55164200	Weak transcription	HSMMtube	muscle
37	chr14:55159400-55165200	Weak transcription	Brain Anterior Caudate	brain
38	chr14:55159400-55165200	Weak transcription	Fetal Lung	lung
39	chr14:55159400-55165400	Weak transcription	Fetal Muscle Trunk	muscle
40	chr14:55159400-55165400	Weak transcription	Spleen	Spleen
41	chr14:55159400-55165400	Weak transcription	NHDF-Ad	bronchial
42	chr14:55159400-55165800	Weak transcription	HSMM	muscle
43	chr14:55159400-55165800	Weak transcription	K562	blood
44	chr14:55159400-55168800	Weak transcription	Osteobl	bone
45	chr14:55159400-55174400	Weak transcription	Ovary	ovary
46	chr14:55159600-55163600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr14:55159600-55169000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr14:55159800-55165400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr14:55160000-55166200	Enhancers	Left Ventricle	heart
50	chr14:55160000-55168800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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