The 2.0 version of rSNPBase

Variant report

Variant rs17127809
Chromosome Location chr14:55188357-55188358
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr14:55153000-55197000 Weak transcription H9 Cell Line embryonic stem cell
2 chr14:55165800-55239200 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr14:55166600-55195600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr14:55168800-55189200 Weak transcription A549 lung
5 chr14:55170200-55203800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr14:55170400-55203400 Weak transcription NHEK skin
7 chr14:55174800-55194400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr14:55179600-55201600 Weak transcription Fetal Muscle Trunk muscle
9 chr14:55180200-55192600 Enhancers Fetal Heart heart
10 chr14:55180400-55194600 Weak transcription Muscle Satellite Cultured Cells --
11 chr14:55180600-55194200 Weak transcription Cortex derived primary cultured neurospheres brain
12 chr14:55181200-55198400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
13 chr14:55182200-55196800 Weak transcription HSMMtube muscle
14 chr14:55182400-55194400 Weak transcription Fetal Muscle Leg muscle
15 chr14:55182800-55189000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr14:55183000-55196600 Weak transcription HSMM muscle
17 chr14:55183000-55197000 Weak transcription Brain Anterior Caudate brain
18 chr14:55183600-55191800 Enhancers Skeletal Muscle Female skeletal muscle
19 chr14:55183800-55192600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr14:55185200-55192400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
21 chr14:55185200-55194400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
22 chr14:55185600-55188400 Weak transcription Fetal Stomach stomach
23 chr14:55185800-55189200 Enhancers Right Ventricle heart
24 chr14:55186000-55190800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr14:55186000-55192800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr14:55186000-55196400 Weak transcription Stomach Smooth Muscle stomach
27 chr14:55186200-55192600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
28 chr14:55186200-55194400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr14:55186200-55195400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr14:55186400-55188400 Weak transcription Colon Smooth Muscle Colon
31 chr14:55186400-55188800 Weak transcription Right Atrium heart
32 chr14:55186400-55194200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr14:55186400-55205000 Weak transcription Lung lung
34 chr14:55186600-55189000 Weak transcription Psoas Muscle Psoas
35 chr14:55186600-55191400 Weak transcription NHLF lung
36 chr14:55186600-55194200 Weak transcription Rectal Smooth Muscle rectum
37 chr14:55186600-55196800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr14:55187000-55190400 Weak transcription HepG2 liver
39 chr14:55187400-55188400 Enhancers Skeletal Muscle Male skeletal muscle
40 chr14:55187400-55191200 Genic enhancers K562 blood
41 chr14:55187800-55188800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr14:55187800-55189000 Weak transcription HUVEC blood vessel
43 chr14:55187800-55190600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
44 chr14:55187800-55194600 Weak transcription Aorta Aorta
45 chr14:55187800-55195600 Weak transcription Left Ventricle heart
46 chr14:55188000-55190400 Weak transcription Liver Liver

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Last update: Aug 31, 2015