The 2.0 version of rSNPBase

Variant report

Variant rs17188470
Chromosome Location chr6:30282435-30282436
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:30256200-30292000 Weak transcription Fetal Heart heart
2 chr6:30257600-30292800 Weak transcription Fetal Kidney kidney
3 chr6:30259000-30287200 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr6:30262600-30292400 Weak transcription Pancreas Pancrea
5 chr6:30262800-30283200 Weak transcription NHLF lung
6 chr6:30262800-30290200 Weak transcription Spleen Spleen
7 chr6:30263000-30293000 Weak transcription Brain Substantia Nigra brain
8 chr6:30264200-30286600 Weak transcription Muscle Satellite Cultured Cells --
9 chr6:30264200-30289800 Weak transcription Gastric stomach
10 chr6:30264400-30285200 Weak transcription Colon Smooth Muscle Colon
11 chr6:30269200-30285800 Strong transcription Dnd41 blood
12 chr6:30270400-30283800 Weak transcription Colonic Mucosa Colon
13 chr6:30270600-30292600 Weak transcription Esophagus oesophagus
14 chr6:30270800-30292200 Weak transcription NHDF-Ad bronchial
15 chr6:30271000-30292400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr6:30271000-30292800 Weak transcription Rectal Smooth Muscle rectum
17 chr6:30271400-30291400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr6:30272200-30292200 Weak transcription Fetal Brain Male brain
19 chr6:30272400-30289600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
20 chr6:30274400-30285400 Strong transcription Primary B cells from cord blood blood
21 chr6:30274600-30292200 Weak transcription Cortex derived primary cultured neurospheres brain
22 chr6:30274600-30292600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
23 chr6:30275200-30286400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
24 chr6:30275400-30286800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr6:30275400-30293400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr6:30276200-30284800 Strong transcription Primary T cells from cord blood blood
27 chr6:30276400-30283800 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr6:30276600-30285200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
29 chr6:30277000-30284200 Strong transcription Breast Myoepithelial Primary Cells Breast
30 chr6:30277000-30284800 Strong transcription Primary T cells fromperipheralblood blood
31 chr6:30277400-30284200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr6:30278200-30284000 Weak transcription Placenta Placenta
33 chr6:30278200-30292400 Weak transcription Skeletal Muscle Female skeletal muscle
34 chr6:30279000-30282800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr6:30279000-30284600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr6:30279000-30284800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr6:30279200-30284800 Strong transcription Primary hematopoietic stem cells short term culture blood
38 chr6:30279200-30284800 Strong transcription Fetal Thymus thymus
39 chr6:30279400-30287200 Strong transcription GM12878-XiMat blood
40 chr6:30279600-30282600 Strong transcription Sigmoid Colon Sigmoid Colon
41 chr6:30279600-30282800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
42 chr6:30279600-30284600 Strong transcription Primary T regulatory cells fromperipheralblood blood
43 chr6:30279600-30285400 Strong transcription HUES6 Cell Line embryonic stem cell
44 chr6:30279600-30288400 Strong transcription Fetal Stomach stomach
45 chr6:30279800-30284200 Strong transcription iPS-18 Cell Line embryonic stem cell
46 chr6:30279800-30284600 Strong transcription Primary T helper cells fromperipheralblood blood
47 chr6:30279800-30284800 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
48 chr6:30279800-30284800 Strong transcription HSMM muscle
49 chr6:30279800-30284800 Strong transcription K562 blood
50 chr6:30279800-30287000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived

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Last update: Aug 31, 2015