Variant report

Variant	rs4713310
Chromosome Location	chr6:30271792-30271793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30270616..30273221-chr6:30274545..30277128,2	MCF-7	breast:
2	chr6:30258650..30265091-chr6:30270138..30274799,6	MCF-7	breast:
3	chr6:30269685..30271838-chr6:30361381..30363519,2	K562	blood:
4	chr6:30268695..30274088-chr6:30293337..30295867,6	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM26-2	chr6:30268551-30271892	ENSG00000231074.4

Variant related genes	Relation type
ENSG00000204599	Chromatin interaction
ENSG00000270604	Chromatin interaction
ENSG00000231074	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10484551	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16897337	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16897339	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17188470	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17194767	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17194789	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17194852	0.92[EUR][1000 genomes]
rs2021363	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2021364	0.86[ASN][1000 genomes]
rs2285794	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2285799	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2894146	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3094070	0.95[ASN][1000 genomes]
rs3094071	0.95[ASN][1000 genomes]
rs3094072	0.95[ASN][1000 genomes]
rs3094073	0.95[ASN][1000 genomes]
rs3094074	0.95[ASN][1000 genomes]
rs3094077	0.95[ASN][1000 genomes]
rs3094630	0.95[ASN][1000 genomes]
rs3094632	0.95[ASN][1000 genomes]
rs3129697	0.95[ASN][1000 genomes]
rs3129699	0.95[ASN][1000 genomes]
rs3129700	0.95[ASN][1000 genomes]
rs3129701	0.95[ASN][1000 genomes]
rs3129702	0.95[ASN][1000 genomes]
rs3129703	0.89[ASN][1000 genomes]
rs3129705	0.95[ASN][1000 genomes]
rs3129706	0.95[ASN][1000 genomes]
rs3129707	0.95[ASN][1000 genomes]
rs3129708	0.95[ASN][1000 genomes]
rs3129831	0.95[ASN][1000 genomes]
rs3129832	0.95[ASN][1000 genomes]
rs3129835	0.95[ASN][1000 genomes]
rs3130398	0.95[ASN][1000 genomes]
rs3130400	0.95[ASN][1000 genomes]
rs3130401	0.95[ASN][1000 genomes]
rs3130403	0.95[ASN][1000 genomes]
rs3130404	0.95[ASN][1000 genomes]
rs3130405	0.82[ASN][1000 genomes]
rs3132655	0.95[ASN][1000 genomes]
rs3132656	0.95[ASN][1000 genomes]
rs3132657	0.95[ASN][1000 genomes]
rs3132658	0.95[ASN][1000 genomes]
rs3132659	0.95[ASN][1000 genomes]
rs3778625	0.86[ASN][1000 genomes]
rs3800332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4711212	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713304	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713306	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713309	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713311	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713312	0.86[ASN][1000 genomes]
rs4713313	0.86[ASN][1000 genomes]
rs4713314	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56707099	0.86[ASN][1000 genomes]
rs56725475	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56812420	0.92[ASN][1000 genomes]
rs56847466	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57708012	0.84[ASN][1000 genomes]
rs57715221	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58226684	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59046803	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60925525	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61017790	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61619108	0.86[ASN][1000 genomes]
rs9261629	0.95[ASN][1000 genomes]
rs9261630	0.95[ASN][1000 genomes]
rs9261636	0.95[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30256200-30292000	Weak transcription	Fetal Heart	heart
2	chr6:30257600-30292800	Weak transcription	Fetal Kidney	kidney
3	chr6:30259000-30287200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:30262600-30271800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr6:30262600-30271800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:30262600-30279200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:30262600-30279600	Weak transcription	Small Intestine	intestine
8	chr6:30262600-30292400	Weak transcription	Pancreas	Pancrea
9	chr6:30262800-30280200	Weak transcription	HUVEC	blood vessel
10	chr6:30262800-30280400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:30262800-30283200	Weak transcription	NHLF	lung
12	chr6:30262800-30290200	Weak transcription	Spleen	Spleen
13	chr6:30263000-30277200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr6:30263000-30280000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr6:30263000-30281400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:30263000-30282000	Weak transcription	Psoas Muscle	Psoas
17	chr6:30263000-30293000	Weak transcription	Brain Substantia Nigra	brain
18	chr6:30263200-30280200	Weak transcription	HSMMtube	muscle
19	chr6:30263200-30280600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:30263200-30281600	Weak transcription	Right Ventricle	heart
21	chr6:30263800-30271800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:30263800-30280800	Weak transcription	Brain Hippocampus Middle	brain
23	chr6:30264000-30271800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:30264000-30280800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:30264200-30280200	Weak transcription	NH-A	brain
26	chr6:30264200-30286600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr6:30264200-30289800	Weak transcription	Gastric	stomach
28	chr6:30264400-30272200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:30264400-30285200	Weak transcription	Colon Smooth Muscle	Colon
30	chr6:30266000-30272400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:30266000-30275400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:30267400-30273400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
33	chr6:30267600-30273200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
34	chr6:30268200-30277800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
35	chr6:30268400-30272200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
36	chr6:30268400-30273000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
37	chr6:30268400-30273000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:30268400-30273200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:30268600-30273000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:30268600-30278200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:30268600-30278600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:30268800-30272400	ZNF genes & repeats	Fetal Intestine Small	intestine
43	chr6:30269000-30273000	Strong transcription	Primary B cells from cord blood	blood
44	chr6:30269000-30274600	Strong transcription	HSMM	muscle
45	chr6:30269000-30275000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:30269000-30277800	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr6:30269000-30278200	Strong transcription	HepG2	liver
48	chr6:30269000-30278600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:30269200-30272000	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr6:30269200-30272000	ZNF genes & repeats	K562	blood

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