Variant report

Variant	rs16897339
Chromosome Location	chr6:30259272-30259273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30258650..30265091-chr6:30270138..30274799,6	MCF-7	breast:
2	chr6:30254447..30256446-chr6:30257313..30259885,2	K562	blood:

Variant related genes	Relation type
ENSG00000231074	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10484551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17188212	0.83[ASN][1000 genomes]
rs17188470	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17194565	0.83[ASN][1000 genomes]
rs17194767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17194789	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17194852	1.00[EUR][1000 genomes]
rs17194859	0.82[EUR][1000 genomes]
rs2021363	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2021364	0.91[ASN][1000 genomes]
rs2285794	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2285799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2894146	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094070	1.00[ASN][1000 genomes]
rs3094071	1.00[ASN][1000 genomes]
rs3094072	1.00[ASN][1000 genomes]
rs3094073	1.00[ASN][1000 genomes]
rs3094074	1.00[ASN][1000 genomes]
rs3094077	1.00[ASN][1000 genomes]
rs3094630	1.00[ASN][1000 genomes]
rs3094632	1.00[ASN][1000 genomes]
rs3129697	1.00[ASN][1000 genomes]
rs3129699	1.00[ASN][1000 genomes]
rs3129700	1.00[ASN][1000 genomes]
rs3129701	1.00[ASN][1000 genomes]
rs3129702	1.00[ASN][1000 genomes]
rs3129703	0.95[ASN][1000 genomes]
rs3129705	1.00[ASN][1000 genomes]
rs3129706	1.00[ASN][1000 genomes]
rs3129707	1.00[ASN][1000 genomes]
rs3129708	1.00[ASN][1000 genomes]
rs3129831	1.00[ASN][1000 genomes]
rs3129832	1.00[ASN][1000 genomes]
rs3129835	1.00[ASN][1000 genomes]
rs3130398	1.00[ASN][1000 genomes]
rs3130400	1.00[ASN][1000 genomes]
rs3130401	1.00[ASN][1000 genomes]
rs3130403	1.00[ASN][1000 genomes]
rs3130404	1.00[ASN][1000 genomes]
rs3130405	0.87[ASN][1000 genomes]
rs3132655	1.00[ASN][1000 genomes]
rs3132656	1.00[ASN][1000 genomes]
rs3132657	1.00[ASN][1000 genomes]
rs3132658	1.00[ASN][1000 genomes]
rs3132659	1.00[ASN][1000 genomes]
rs3778625	0.91[ASN][1000 genomes]
rs3800332	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711210	0.83[ASN][1000 genomes]
rs4711212	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713302	0.83[ASN][1000 genomes]
rs4713304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713310	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713311	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713312	0.91[ASN][1000 genomes]
rs4713313	0.91[ASN][1000 genomes]
rs4713314	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56707099	0.91[ASN][1000 genomes]
rs56725475	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56812420	0.86[ASN][1000 genomes]
rs56847466	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57686281	0.83[ASN][1000 genomes]
rs57708012	0.89[ASN][1000 genomes]
rs57715221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58226684	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59046803	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60925525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61017790	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61619108	0.91[ASN][1000 genomes]
rs9261629	1.00[ASN][1000 genomes]
rs9261630	1.00[ASN][1000 genomes]
rs9261636	1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30247600-30262400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:30252200-30262600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr6:30253000-30259400	Weak transcription	Psoas Muscle	Psoas
4	chr6:30255200-30259800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr6:30255200-30261000	Weak transcription	Fetal Brain Male	brain
6	chr6:30255600-30259600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:30255600-30261200	Weak transcription	Stomach Mucosa	stomach
8	chr6:30255600-30264000	Strong transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:30255800-30260200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:30255800-30261400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:30255800-30264400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:30256000-30260200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
13	chr6:30256000-30263200	Strong transcription	HSMMtube	muscle
14	chr6:30256000-30270200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:30256200-30259800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
16	chr6:30256200-30259800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
17	chr6:30256200-30261200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
18	chr6:30256200-30262800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
19	chr6:30256200-30263800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr6:30256200-30264000	Strong transcription	Brain Anterior Caudate	brain
21	chr6:30256200-30264800	Strong transcription	Primary B cells from peripheral blood	blood
22	chr6:30256200-30292000	Weak transcription	Fetal Heart	heart
23	chr6:30256400-30263200	Strong transcription	Brain Inferior Temporal Lobe	brain
24	chr6:30256400-30263200	Strong transcription	Thymus	Thymus
25	chr6:30256400-30263400	Strong transcription	Left Ventricle	heart
26	chr6:30256400-30263800	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr6:30256400-30263800	Strong transcription	Fetal Intestine Large	intestine
28	chr6:30256400-30264000	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr6:30256400-30264200	Strong transcription	Skeletal Muscle Female	skeletal muscle
30	chr6:30256400-30264200	Strong transcription	Stomach Smooth Muscle	stomach
31	chr6:30256400-30264400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:30256600-30263600	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr6:30256600-30263800	Strong transcription	A549	lung
34	chr6:30256600-30264200	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr6:30256800-30259800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:30256800-30263200	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr6:30256800-30263800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:30256800-30264400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:30257000-30261600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr6:30257000-30262200	Weak transcription	Hela-S3	cervix
41	chr6:30257000-30263800	Strong transcription	Primary B cells from cord blood	blood
42	chr6:30257000-30264000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:30257000-30264000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr6:30257000-30264000	Strong transcription	Placenta	Placenta
45	chr6:30257000-30264200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:30257000-30264200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:30257000-30264200	Strong transcription	Fetal Stomach	stomach
48	chr6:30257000-30264200	Strong transcription	NH-A	brain
49	chr6:30257000-30264400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:30257000-30264400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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