Variant report

Variant	rs2021363
Chromosome Location	chr6:30250600-30250601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30247937..30250793-chr6:30252677..30256148,3	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10484551	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897337	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897339	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17188212	0.83[ASN][1000 genomes]
rs17188470	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17194565	0.83[ASN][1000 genomes]
rs17194767	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17194789	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17194852	1.00[EUR][1000 genomes]
rs17194859	0.82[EUR][1000 genomes]
rs2021364	0.91[ASN][1000 genomes]
rs2285794	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2285799	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2894146	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094070	1.00[ASN][1000 genomes]
rs3094071	1.00[ASN][1000 genomes]
rs3094072	1.00[ASN][1000 genomes]
rs3094073	1.00[ASN][1000 genomes]
rs3094074	1.00[ASN][1000 genomes]
rs3094077	1.00[ASN][1000 genomes]
rs3094630	1.00[ASN][1000 genomes]
rs3094632	1.00[ASN][1000 genomes]
rs3129697	1.00[ASN][1000 genomes]
rs3129699	1.00[ASN][1000 genomes]
rs3129700	1.00[ASN][1000 genomes]
rs3129701	1.00[ASN][1000 genomes]
rs3129702	1.00[ASN][1000 genomes]
rs3129703	0.95[ASN][1000 genomes]
rs3129705	1.00[ASN][1000 genomes]
rs3129706	1.00[ASN][1000 genomes]
rs3129707	1.00[ASN][1000 genomes]
rs3129708	1.00[ASN][1000 genomes]
rs3129831	1.00[ASN][1000 genomes]
rs3129832	1.00[ASN][1000 genomes]
rs3129835	1.00[ASN][1000 genomes]
rs3130398	1.00[ASN][1000 genomes]
rs3130400	1.00[ASN][1000 genomes]
rs3130401	1.00[ASN][1000 genomes]
rs3130403	1.00[ASN][1000 genomes]
rs3130404	1.00[ASN][1000 genomes]
rs3130405	0.87[ASN][1000 genomes]
rs3132655	1.00[ASN][1000 genomes]
rs3132656	1.00[ASN][1000 genomes]
rs3132657	1.00[ASN][1000 genomes]
rs3132658	1.00[ASN][1000 genomes]
rs3132659	1.00[ASN][1000 genomes]
rs3778625	0.91[ASN][1000 genomes]
rs3800332	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711210	0.83[ASN][1000 genomes]
rs4711212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713302	0.83[ASN][1000 genomes]
rs4713304	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713306	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713309	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713310	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713311	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713312	0.91[ASN][1000 genomes]
rs4713313	0.91[ASN][1000 genomes]
rs4713314	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56707099	0.91[ASN][1000 genomes]
rs56725475	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56812420	0.86[ASN][1000 genomes]
rs56847466	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57686281	0.83[ASN][1000 genomes]
rs57708012	0.89[ASN][1000 genomes]
rs57715221	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58226684	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59046803	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60925525	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61017790	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61619108	0.91[ASN][1000 genomes]
rs9261629	1.00[ASN][1000 genomes]
rs9261630	1.00[ASN][1000 genomes]
rs9261636	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884062	chr6:30237454-30256838	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30247400-30253000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:30247600-30262400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:30248400-30251600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr6:30248400-30253400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:30248400-30255600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:30248600-30254000	ZNF genes & repeats	Liver	Liver
7	chr6:30248800-30251400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
8	chr6:30250400-30252600	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr6:30250600-30252200	ZNF genes & repeats	Fetal Brain Female	brain
10	chr6:30250600-30252800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links