Variant report

Variant	rs3094632
Chromosome Location	chr6:30225273-30225274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30182145..30184666-chr6:30223310..30225294,2	MCF-7	breast:
2	chr6:30224455..30226644-chr6:30292386..30294096,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231074	Chromatin interaction
ENSG00000270604	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10484551	1.00[ASN][1000 genomes]
rs16897337	1.00[ASN][1000 genomes]
rs16897339	1.00[ASN][1000 genomes]
rs17188212	0.83[ASN][1000 genomes]
rs17194565	0.83[ASN][1000 genomes]
rs17194767	1.00[ASN][1000 genomes]
rs2021363	1.00[ASN][1000 genomes]
rs2021364	0.91[ASN][1000 genomes]
rs2188100	0.80[EUR][1000 genomes]
rs2285794	1.00[ASN][1000 genomes]
rs2285799	1.00[ASN][1000 genomes]
rs2517612	0.80[EUR][1000 genomes]
rs2523715	0.80[EUR][1000 genomes]
rs2844770	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2844771	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2844773	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2894146	1.00[ASN][1000 genomes]
rs3094070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094076	0.98[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3094077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094629	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3094630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3129704	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs3129705	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129706	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129708	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129835	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129836	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs3129837	0.98[EUR][1000 genomes]
rs3129840	0.98[EUR][1000 genomes]
rs3130398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130405	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3132650	0.98[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs3132655	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3132656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3132657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3132658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3132659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778625	0.91[ASN][1000 genomes]
rs3800332	1.00[ASN][1000 genomes]
rs4711210	0.83[ASN][1000 genomes]
rs4711212	1.00[ASN][1000 genomes]
rs4713302	0.83[ASN][1000 genomes]
rs4713304	1.00[ASN][1000 genomes]
rs4713306	1.00[ASN][1000 genomes]
rs4713309	1.00[ASN][1000 genomes]
rs4713310	0.95[ASN][1000 genomes]
rs4713311	1.00[ASN][1000 genomes]
rs4713312	0.91[ASN][1000 genomes]
rs4713313	0.91[ASN][1000 genomes]
rs4713314	1.00[ASN][1000 genomes]
rs56707099	0.91[ASN][1000 genomes]
rs56725475	1.00[ASN][1000 genomes]
rs56812420	0.86[ASN][1000 genomes]
rs56847466	1.00[ASN][1000 genomes]
rs57686281	0.83[ASN][1000 genomes]
rs57708012	0.89[ASN][1000 genomes]
rs57715221	1.00[ASN][1000 genomes]
rs58226684	1.00[ASN][1000 genomes]
rs59046803	1.00[ASN][1000 genomes]
rs60925525	1.00[ASN][1000 genomes]
rs61017790	1.00[ASN][1000 genomes]
rs61619108	0.91[ASN][1000 genomes]
rs885913	0.80[EUR][1000 genomes]
rs885916	0.82[EUR][1000 genomes]
rs9261629	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261630	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3094632	HLA-C	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30218800-30226000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:30222800-30226000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:30225200-30226600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:30225200-30226800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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