The 2.0 version of rSNPBase

Variant report

Variant rs56707099
Chromosome Location chr6:30277480-30277481
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:30256200-30292000 Weak transcription Fetal Heart heart
2 chr6:30257600-30292800 Weak transcription Fetal Kidney kidney
3 chr6:30259000-30287200 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr6:30262600-30279200 Weak transcription Skeletal Muscle Male skeletal muscle
5 chr6:30262600-30279600 Weak transcription Small Intestine intestine
6 chr6:30262600-30292400 Weak transcription Pancreas Pancrea
7 chr6:30262800-30280200 Weak transcription HUVEC blood vessel
8 chr6:30262800-30280400 Weak transcription Brain Cingulate Gyrus brain
9 chr6:30262800-30283200 Weak transcription NHLF lung
10 chr6:30262800-30290200 Weak transcription Spleen Spleen
11 chr6:30263000-30280000 Weak transcription Placenta Amnion Placenta Amnion
12 chr6:30263000-30281400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
13 chr6:30263000-30282000 Weak transcription Psoas Muscle Psoas
14 chr6:30263000-30293000 Weak transcription Brain Substantia Nigra brain
15 chr6:30263200-30280200 Weak transcription HSMMtube muscle
16 chr6:30263200-30280600 Weak transcription Brain Inferior Temporal Lobe brain
17 chr6:30263200-30281600 Weak transcription Right Ventricle heart
18 chr6:30263800-30280800 Weak transcription Brain Hippocampus Middle brain
19 chr6:30264000-30280800 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr6:30264200-30280200 Weak transcription NH-A brain
21 chr6:30264200-30286600 Weak transcription Muscle Satellite Cultured Cells --
22 chr6:30264200-30289800 Weak transcription Gastric stomach
23 chr6:30264400-30285200 Weak transcription Colon Smooth Muscle Colon
24 chr6:30268200-30277800 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
25 chr6:30268600-30278200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr6:30268600-30278600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr6:30269000-30277800 Strong transcription Rectal Mucosa Donor 29 rectum
28 chr6:30269000-30278200 Strong transcription HepG2 liver
29 chr6:30269000-30278600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr6:30269200-30285800 Strong transcription Dnd41 blood
31 chr6:30270400-30283800 Weak transcription Colonic Mucosa Colon
32 chr6:30270600-30278200 Strong transcription NHEK skin
33 chr6:30270600-30279600 Weak transcription Left Ventricle heart
34 chr6:30270600-30292600 Weak transcription Esophagus oesophagus
35 chr6:30270800-30278200 Strong transcription Monocytes-CD14+_RO01746 blood
36 chr6:30270800-30279200 Weak transcription Adipose Nuclei Adipose
37 chr6:30270800-30280200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
38 chr6:30270800-30281600 Weak transcription Fetal Lung lung
39 chr6:30270800-30292200 Weak transcription NHDF-Ad bronchial
40 chr6:30271000-30281000 Weak transcription Lung lung
41 chr6:30271000-30281600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
42 chr6:30271000-30292400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
43 chr6:30271000-30292800 Weak transcription Rectal Smooth Muscle rectum
44 chr6:30271200-30280200 Weak transcription Primary monocytes fromperipheralblood blood
45 chr6:30271400-30278400 Strong transcription Primary hematopoietic stem cells short term culture blood
46 chr6:30271400-30280400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
47 chr6:30271400-30280800 Weak transcription Brain Angular Gyrus brain
48 chr6:30271400-30281000 Weak transcription Ovary ovary
49 chr6:30271400-30281400 Weak transcription Brain Anterior Caudate brain
50 chr6:30271400-30282200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015