Variant report

Variant	rs9261630
Chromosome Location	chr6:30227915-30227916
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30225449..30228967-chr6:30292795..30296377,4	K562	blood:
2	chr6:30226682..30228906-chr6:30311932..30314057,2	MCF-7	breast:
3	chr6:30225542..30228363-chr6:30311426..30313496,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204599	Chromatin interaction
ENSG00000270604	Chromatin interaction
ENSG00000241370	Chromatin interaction
ENSG00000231074	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10484551	1.00[ASN][1000 genomes]
rs16897337	1.00[ASN][1000 genomes]
rs16897339	1.00[ASN][1000 genomes]
rs17188212	0.83[ASN][1000 genomes]
rs17194565	0.83[ASN][1000 genomes]
rs17194767	1.00[ASN][1000 genomes]
rs2021363	1.00[ASN][1000 genomes]
rs2021364	0.91[ASN][1000 genomes]
rs2188100	0.80[EUR][1000 genomes]
rs2285794	1.00[ASN][1000 genomes]
rs2285799	1.00[ASN][1000 genomes]
rs2517612	0.80[EUR][1000 genomes]
rs2523715	0.80[EUR][1000 genomes]
rs2844770	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2844771	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2844773	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2894146	1.00[ASN][1000 genomes]
rs3094070	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094071	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094072	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094073	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094074	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094076	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3094077	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094629	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3094630	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094632	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129697	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129699	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129700	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129701	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129702	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129703	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3129704	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs3129705	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129706	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129707	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129708	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129831	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129832	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129835	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3129836	0.98[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs3129837	0.98[EUR][1000 genomes]
rs3129840	0.98[EUR][1000 genomes]
rs3130398	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130400	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130401	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130403	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130404	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130405	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3132650	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs3132655	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3132656	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3132657	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3132658	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3132659	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778625	0.91[ASN][1000 genomes]
rs3800332	1.00[ASN][1000 genomes]
rs4711210	0.83[ASN][1000 genomes]
rs4711212	1.00[ASN][1000 genomes]
rs4713302	0.83[ASN][1000 genomes]
rs4713304	1.00[ASN][1000 genomes]
rs4713306	1.00[ASN][1000 genomes]
rs4713309	1.00[ASN][1000 genomes]
rs4713310	0.95[ASN][1000 genomes]
rs4713311	1.00[ASN][1000 genomes]
rs4713312	0.91[ASN][1000 genomes]
rs4713313	0.91[ASN][1000 genomes]
rs4713314	1.00[ASN][1000 genomes]
rs56707099	0.91[ASN][1000 genomes]
rs56725475	1.00[ASN][1000 genomes]
rs56812420	0.86[ASN][1000 genomes]
rs56847466	1.00[ASN][1000 genomes]
rs57686281	0.83[ASN][1000 genomes]
rs57708012	0.89[ASN][1000 genomes]
rs57715221	1.00[ASN][1000 genomes]
rs58226684	1.00[ASN][1000 genomes]
rs59046803	1.00[ASN][1000 genomes]
rs60925525	1.00[ASN][1000 genomes]
rs61017790	1.00[ASN][1000 genomes]
rs61619108	0.91[ASN][1000 genomes]
rs885913	0.80[EUR][1000 genomes]
rs885916	0.82[EUR][1000 genomes]
rs9261629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261636	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30226600-30228000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr6:30226600-30229000	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr6:30226800-30228000	Active TSS	Right Atrium	heart
4	chr6:30226800-30228200	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr6:30226800-30228200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:30226800-30228200	Active TSS	Brain Anterior Caudate	brain
7	chr6:30226800-30228200	Active TSS	Brain Cingulate Gyrus	brain
8	chr6:30226800-30228200	Active TSS	A549	lung
9	chr6:30226800-30228400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr6:30226800-30228400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr6:30226800-30228400	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr6:30226800-30228400	Active TSS	HSMM	muscle
13	chr6:30226800-30228600	Enhancers	Fetal Brain Male	brain
14	chr6:30226800-30228600	Enhancers	Fetal Heart	heart
15	chr6:30226800-30228800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:30227000-30228000	Active TSS	Fetal Kidney	kidney
17	chr6:30227000-30228000	Active TSS	Gastric	stomach
18	chr6:30227000-30228000	Active TSS	Right Ventricle	heart
19	chr6:30227000-30228000	Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr6:30227000-30228200	Active TSS	H9 Cell Line	embryonic stem cell
21	chr6:30227000-30228200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:30227000-30228200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:30227000-30228200	Active TSS	Aorta	Aorta
24	chr6:30227000-30228200	Flanking Active TSS	Liver	Liver
25	chr6:30227000-30228200	Active TSS	Colonic Mucosa	Colon
26	chr6:30227000-30228200	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr6:30227000-30228200	Active TSS	Ovary	ovary
28	chr6:30227000-30228200	Active TSS	HSMMtube	muscle
29	chr6:30227000-30228200	Active TSS	NH-A	brain
30	chr6:30227000-30228400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:30227000-30228400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
32	chr6:30227000-30228400	Active TSS	Psoas Muscle	Psoas
33	chr6:30227000-30228400	Active TSS	NHLF	lung
34	chr6:30227200-30228000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:30227200-30228000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:30227200-30228000	Active TSS	Esophagus	oesophagus
37	chr6:30227200-30228000	Active TSS	Left Ventricle	heart
38	chr6:30227200-30228000	Active TSS	Lung	lung
39	chr6:30227200-30228000	Active TSS	Placenta Amnion	Placenta Amnion
40	chr6:30227200-30228000	Active TSS	Sigmoid Colon	Sigmoid Colon
41	chr6:30227200-30228000	Active TSS	Small Intestine	intestine
42	chr6:30227200-30228000	Active TSS	NHDF-Ad	bronchial
43	chr6:30227200-30228200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:30227200-30228200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:30227200-30228200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
46	chr6:30227200-30228200	Active TSS	Primary T helper naive cells from peripheral blood	blood
47	chr6:30227200-30228200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
48	chr6:30227200-30228200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:30227200-30228200	Active TSS	Muscle Satellite Cultured Cells	--
50	chr6:30227200-30228200	Active TSS	Brain Angular Gyrus	brain

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