Variant report

Variant	rs4713306
Chromosome Location	chr6:30254495-30254496
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:30237407..30239197-chr6:30252856..30255574,2	K562	blood:
2	chr6:30247937..30250793-chr6:30252677..30256148,3	MCF-7	breast:
3	chr6:30254447..30256446-chr6:30257313..30259885,2	K562	blood:
4	chr6:30233530..30235918-chr6:30253137..30255680,2	K562	blood:
5	chr6:30252759..30255238-chr6:30259502..30262468,2	MCF-7	breast:
6	chr6:30253591..30255110-chr6:30268518..30271237,2	K562	blood:
7	chr6:30253777..30255721-chr6:30311555..30314145,2	K562	blood:
8	chr6:30253881..30256754-chr6:30260097..30262848,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000241370	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10484551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16897339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17188212	0.83[ASN][1000 genomes]
rs17188470	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17194565	0.83[ASN][1000 genomes]
rs17194767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17194789	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17194852	1.00[EUR][1000 genomes]
rs17194859	0.82[EUR][1000 genomes]
rs2021363	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2021364	0.91[ASN][1000 genomes]
rs2285794	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2285799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2894146	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094070	1.00[ASN][1000 genomes]
rs3094071	1.00[ASN][1000 genomes]
rs3094072	1.00[ASN][1000 genomes]
rs3094073	1.00[ASN][1000 genomes]
rs3094074	1.00[ASN][1000 genomes]
rs3094077	1.00[ASN][1000 genomes]
rs3094630	1.00[ASN][1000 genomes]
rs3094632	1.00[ASN][1000 genomes]
rs3129697	1.00[ASN][1000 genomes]
rs3129699	1.00[ASN][1000 genomes]
rs3129700	1.00[ASN][1000 genomes]
rs3129701	1.00[ASN][1000 genomes]
rs3129702	1.00[ASN][1000 genomes]
rs3129703	0.95[ASN][1000 genomes]
rs3129705	1.00[ASN][1000 genomes]
rs3129706	1.00[ASN][1000 genomes]
rs3129707	1.00[ASN][1000 genomes]
rs3129708	1.00[ASN][1000 genomes]
rs3129831	1.00[ASN][1000 genomes]
rs3129832	1.00[ASN][1000 genomes]
rs3129835	1.00[ASN][1000 genomes]
rs3130398	1.00[ASN][1000 genomes]
rs3130400	1.00[ASN][1000 genomes]
rs3130401	1.00[ASN][1000 genomes]
rs3130403	1.00[ASN][1000 genomes]
rs3130404	1.00[ASN][1000 genomes]
rs3130405	0.87[ASN][1000 genomes]
rs3132655	1.00[ASN][1000 genomes]
rs3132656	1.00[ASN][1000 genomes]
rs3132657	1.00[ASN][1000 genomes]
rs3132658	1.00[ASN][1000 genomes]
rs3132659	1.00[ASN][1000 genomes]
rs3778625	0.91[ASN][1000 genomes]
rs3800332	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711210	0.83[ASN][1000 genomes]
rs4711212	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713302	0.83[ASN][1000 genomes]
rs4713304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713310	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713311	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713312	0.91[ASN][1000 genomes]
rs4713313	0.91[ASN][1000 genomes]
rs4713314	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56707099	0.91[ASN][1000 genomes]
rs56725475	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56812420	0.86[ASN][1000 genomes]
rs56847466	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57686281	0.83[ASN][1000 genomes]
rs57708012	0.89[ASN][1000 genomes]
rs57715221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58226684	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59046803	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60925525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61017790	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61619108	0.91[ASN][1000 genomes]
rs9261629	1.00[ASN][1000 genomes]
rs9261630	1.00[ASN][1000 genomes]
rs9261636	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884062	chr6:30237454-30256838	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30247600-30262400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:30248400-30255600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:30252200-30262600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr6:30252800-30256600	Weak transcription	A549	lung
5	chr6:30253000-30256400	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:30253000-30256600	Weak transcription	Brain Angular Gyrus	brain
7	chr6:30253000-30259400	Weak transcription	Psoas Muscle	Psoas
8	chr6:30253200-30256000	Weak transcription	HSMMtube	muscle
9	chr6:30253200-30256200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:30253200-30256400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:30253200-30256400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:30253200-30256600	Weak transcription	Right Ventricle	heart
13	chr6:30253400-30256600	Weak transcription	NHDF-Ad	bronchial
14	chr6:30253600-30256600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:30253600-30259000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:30254200-30256400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:30254200-30256400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:30254200-30256400	Weak transcription	Brain Substantia Nigra	brain
19	chr6:30254400-30256600	Weak transcription	Rectal Mucosa Donor 31	rectum

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