Variant report

Variant	rs17380333
Chromosome Location	chr12:26329776-26329777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1480037	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17366300	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17366955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17367221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17380416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17463675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17464133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17464383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1871557	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2343870	1.00[ASN][1000 genomes]
rs4963650	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4963960	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4963962	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4963965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4963966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4963970	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7358598	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26326600-26330200	Weak transcription	GM12878-XiMat	blood
2	chr12:26328200-26331200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr12:26329200-26331000	Enhancers	Fetal Intestine Small	intestine
4	chr12:26329200-26331200	Enhancers	Fetal Intestine Large	intestine
5	chr12:26329400-26330600	Enhancers	Stomach Mucosa	stomach
6	chr12:26329400-26331200	Enhancers	Small Intestine	intestine
7	chr12:26329600-26329800	Flanking Active TSS	Duodenum Mucosa	Duodenum
8	chr12:26329600-26330200	Active TSS	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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