Variant report

Variant	rs4963650
Chromosome Location	chr12:26336017-26336018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1480037	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17366300	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17366955	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17367221	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17380333	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17380416	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17380788	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17463675	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17464133	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17464383	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2343870	1.00[ASN][1000 genomes]
rs4963958	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4963960	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4963962	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4963965	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4963966	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4963970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7358598	1.00[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv648	chr12:26330291-26375186	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26330800-26337800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:26332400-26338200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:26336000-26336600	Weak transcription	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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