Variant report

Variant	rs4963962
Chromosome Location	chr12:26306795-26306796
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26272271..26272871-chr12:26306501..26307365,2	MCF-7	breast:
2	chr12:26301690..26304457-chr12:26305717..26307853,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11048402	1.00[AFR][1000 genomes]
rs1480037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17366300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17366955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17367221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17380333	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17380416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17463675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17464133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17464383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1871557	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4963650	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4963958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4963960	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963970	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7358598	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26302800-26307600	Enhancers	NHLF	lung
2	chr12:26302800-26308200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:26303000-26307600	Enhancers	Osteobl	bone
4	chr12:26303000-26307800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr12:26303200-26311600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:26304000-26308600	Weak transcription	Fetal Thymus	thymus
7	chr12:26305000-26311200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr12:26305200-26308000	Enhancers	HMEC	breast
9	chr12:26305400-26307800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr12:26305400-26307800	Enhancers	HUVEC	blood vessel
11	chr12:26305400-26308400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr12:26305400-26308800	Enhancers	Primary B cells from peripheral blood	blood
13	chr12:26305600-26306800	Enhancers	Duodenum Mucosa	Duodenum
14	chr12:26305600-26307400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr12:26305600-26307400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr12:26305600-26307600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr12:26305600-26307800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr12:26305800-26307200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr12:26305800-26307200	Enhancers	Placenta Amnion	Placenta Amnion
20	chr12:26305800-26307200	Enhancers	Rectal Smooth Muscle	rectum
21	chr12:26305800-26307200	Enhancers	HepG2	liver
22	chr12:26305800-26307400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr12:26305800-26307400	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr12:26305800-26307600	Enhancers	Hela-S3	cervix
25	chr12:26305800-26308000	Enhancers	Pancreas	Pancrea
26	chr12:26306000-26306800	Weak transcription	Esophagus	oesophagus
27	chr12:26306000-26306800	Enhancers	Fetal Heart	heart
28	chr12:26306000-26307000	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr12:26306000-26307200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr12:26306000-26311400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr12:26306000-26311400	Weak transcription	Gastric	stomach
32	chr12:26306200-26306800	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr12:26306200-26307400	Enhancers	Colon Smooth Muscle	Colon
34	chr12:26306200-26307600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr12:26306400-26306800	Enhancers	Primary B cells from cord blood	blood
36	chr12:26306400-26306800	Enhancers	Right Atrium	heart
37	chr12:26306400-26307000	Enhancers	Brain Anterior Caudate	brain
38	chr12:26306400-26307000	Enhancers	Fetal Intestine Small	intestine
39	chr12:26306400-26307200	Enhancers	Brain Hippocampus Middle	brain
40	chr12:26306400-26307400	Enhancers	Ovary	ovary
41	chr12:26306400-26308000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr12:26306400-26308400	Enhancers	GM12878-XiMat	blood
43	chr12:26306600-26306800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr12:26306600-26306800	Enhancers	Fetal Muscle Leg	muscle
45	chr12:26306600-26306800	Enhancers	Spleen	Spleen
46	chr12:26306600-26307000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr12:26306600-26307000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr12:26306600-26307000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr12:26306600-26307000	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr12:26306600-26307000	Enhancers	Pancreatic Islets	Pancreatic Islet

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