Variant report

Variant	rs4963960
Chromosome Location	chr12:26305265-26305266
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1480037	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17366300	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17366955	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17367221	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17380333	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17380416	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17463675	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17464133	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17464383	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1871557	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4963650	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4963958	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4963962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963965	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963966	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963970	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7358598	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26288600-26306600	Weak transcription	Aorta	Aorta
2	chr12:26301400-26306000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr12:26302600-26306600	Enhancers	NHDF-Ad	bronchial
4	chr12:26302800-26307600	Enhancers	NHLF	lung
5	chr12:26302800-26308200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr12:26303000-26306600	Enhancers	HSMM	muscle
7	chr12:26303000-26307600	Enhancers	Osteobl	bone
8	chr12:26303000-26307800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr12:26303200-26305600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr12:26303200-26305800	Weak transcription	Pancreas	Pancrea
11	chr12:26303200-26306600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr12:26303200-26306600	Enhancers	NH-A	brain
13	chr12:26303200-26311600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr12:26303400-26305800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr12:26303600-26305800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr12:26303800-26306000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr12:26303800-26306400	Weak transcription	Fetal Muscle Leg	muscle
18	chr12:26303800-26306600	Enhancers	HSMMtube	muscle
19	chr12:26304000-26306600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr12:26304000-26308600	Weak transcription	Fetal Thymus	thymus
21	chr12:26304200-26305400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr12:26304200-26305800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr12:26304200-26306200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr12:26304400-26305800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr12:26304600-26305600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr12:26304600-26305600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr12:26304600-26305800	Weak transcription	Right Atrium	heart
28	chr12:26304600-26305800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr12:26304600-26306200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr12:26304600-26306200	Weak transcription	Colon Smooth Muscle	Colon
31	chr12:26304600-26306400	Weak transcription	Brain Anterior Caudate	brain
32	chr12:26304600-26306400	Weak transcription	Brain Hippocampus Middle	brain
33	chr12:26304800-26306600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr12:26304800-26306600	Weak transcription	Brain Substantia Nigra	brain
35	chr12:26304800-26306600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr12:26305000-26305400	Weak transcription	Primary B cells from peripheral blood	blood
37	chr12:26305000-26311200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr12:26305200-26305600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr12:26305200-26306600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr12:26305200-26308000	Enhancers	HMEC	breast

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