Variant report

Variant	rs4963965
Chromosome Location	chr12:26310251-26310252
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:26308692..26310316-chr12:26311328..26313517,2	MCF-7	breast:
2	chr12:26301967..26303907-chr12:26310104..26311796,2	K562	blood:
3	chr12:26308693..26311647-chr12:26329505..26331946,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11048402	1.00[AFR][1000 genomes]
rs1480037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17366300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17366955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17367221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17380333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17380416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17463675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17464133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17464383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1871557	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4963650	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4963958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4963960	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963970	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7358598	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26303200-26311600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:26305000-26311200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr12:26306000-26311400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:26306000-26311400	Weak transcription	Gastric	stomach
5	chr12:26306600-26311800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr12:26306800-26311600	Weak transcription	Spleen	Spleen
7	chr12:26307000-26311600	Weak transcription	Esophagus	oesophagus
8	chr12:26307800-26311000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:26308000-26316800	Weak transcription	HMEC	breast
10	chr12:26308400-26311400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr12:26309000-26311200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr12:26309200-26310600	Enhancers	Duodenum Mucosa	Duodenum
13	chr12:26309400-26310400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr12:26309600-26310400	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr12:26309600-26310800	Enhancers	Fetal Intestine Small	intestine
16	chr12:26309800-26310800	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr12:26309800-26311200	Weak transcription	Pancreas	Pancrea
18	chr12:26309800-26311200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr12:26309800-26311600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr12:26310000-26310400	Enhancers	Fetal Intestine Large	intestine
21	chr12:26310000-26312200	Enhancers	Primary B cells from cord blood	blood
22	chr12:26310200-26310600	Enhancers	Stomach Mucosa	stomach
23	chr12:26310200-26312400	Enhancers	GM12878-XiMat	blood
24	chr12:26310200-26316600	Enhancers	Primary B cells from peripheral blood	blood

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