Variant report

Variant	rs17546173
Chromosome Location	chr10:119151245-119151246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119150900..119153984-chr10:119161520..119164419,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11815112	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816871	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12252333	0.81[AMR][1000 genomes]
rs17545115	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17545387	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17628116	0.80[EUR][1000 genomes]
rs61865312	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61865314	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61865317	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7067870	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100905	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900213	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902117	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908406	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909861	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917325	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924178	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17546173	SLC18A2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119149400-119152600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr10:119150600-119151800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:119150800-119151600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr10:119150800-119151600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:119150800-119151800	Enhancers	Osteobl	bone
6	chr10:119150800-119152400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:119150800-119152400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:119150800-119152400	Enhancers	Esophagus	oesophagus
9	chr10:119150800-119152800	Enhancers	Liver	Liver
10	chr10:119151000-119151400	Enhancers	HSMMtube	muscle
11	chr10:119151000-119151800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:119151000-119151800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:119151000-119151800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:119151000-119151800	Enhancers	Adipose Nuclei	Adipose
15	chr10:119151000-119152800	Enhancers	HepG2	liver
16	chr10:119151200-119151400	Enhancers	Stomach Mucosa	stomach
17	chr10:119151200-119151400	Enhancers	HMEC	breast
18	chr10:119151200-119151400	Enhancers	NH-A	brain
19	chr10:119151200-119151800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr10:119151200-119152200	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links