Variant report

Variant	rs7100905
Chromosome Location	chr10:119108811-119108812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11815112	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816871	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12256256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12337	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap]
rs17545115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17545387	0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17546173	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17627160	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap]
rs17627569	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs17628116	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs363226	0.84[CEU][hapmap]
rs61865312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61865314	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61865317	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7067870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900213	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902117	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908406	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909861	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924178	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7100905	SLC18A2	Cis_1M	lymphoblastoid	RTeQTL
rs7100905	C10orf81	cis	cerebellum	SCAN

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119063800-119113200	Weak transcription	Fetal Thymus	thymus
2	chr10:119066800-119111600	Weak transcription	Colonic Mucosa	Colon
3	chr10:119072000-119111200	Weak transcription	Aorta	Aorta
4	chr10:119082400-119118600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:119094000-119113200	Weak transcription	Thymus	Thymus
6	chr10:119095000-119113200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:119095600-119112200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:119095600-119113400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:119096800-119112000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr10:119097000-119112000	Weak transcription	Brain Anterior Caudate	brain
11	chr10:119097000-119114600	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:119099800-119114800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:119100000-119114800	Weak transcription	Fetal Heart	heart
14	chr10:119100200-119109400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:119100200-119131000	Weak transcription	Fetal Muscle Leg	muscle
16	chr10:119101000-119112800	Weak transcription	Dnd41	blood
17	chr10:119102200-119112800	Weak transcription	Primary B cells from cord blood	blood
18	chr10:119102400-119110600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr10:119102400-119114600	Weak transcription	Spleen	Spleen
20	chr10:119102400-119131400	Weak transcription	Psoas Muscle	Psoas
21	chr10:119102600-119109000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:119102600-119113400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr10:119102600-119113400	Weak transcription	Brain Angular Gyrus	brain
24	chr10:119102600-119119000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:119102800-119119600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:119102800-119123600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:119104400-119109400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:119104600-119109000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:119105000-119109000	Weak transcription	Right Atrium	heart
30	chr10:119105000-119110400	Weak transcription	GM12878-XiMat	blood
31	chr10:119105000-119111200	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr10:119105000-119115000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:119105000-119118400	Weak transcription	Ovary	ovary
34	chr10:119105000-119119600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:119105200-119110400	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr10:119105200-119112000	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr10:119105200-119113400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr10:119105400-119110400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr10:119105400-119110800	Weak transcription	Liver	Liver
40	chr10:119105400-119110800	Enhancers	A549	lung
41	chr10:119105400-119111000	Weak transcription	Primary T cells from cord blood	blood
42	chr10:119105400-119111800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr10:119105400-119112000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr10:119105400-119112200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr10:119105400-119113400	Weak transcription	HepG2	liver
46	chr10:119105800-119109200	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr10:119106600-119111000	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr10:119106600-119111000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr10:119106800-119112200	Weak transcription	Pancreas	Pancrea
50	chr10:119107000-119109000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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