Variant report
| Variant | rs17625931 |
|---|---|
| Chromosome Location | chr2:7296439-7296440 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr17:58168063..58170589-chr2:7296205..7298452,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000261040 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10495551 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1050563 | 1.00[ASN][1000 genomes] |
| rs11675248 | 1.00[ASN][1000 genomes] |
| rs12104956 | 1.00[ASN][1000 genomes] |
| rs17668045 | 1.00[ASN][1000 genomes] |
| rs17668081 | 1.00[ASN][1000 genomes] |
| rs17671192 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4668524 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55650814 | 1.00[ASN][1000 genomes] |
| rs55688218 | 1.00[ASN][1000 genomes] |
| rs55977534 | 1.00[ASN][1000 genomes] |
| rs56198546 | 1.00[ASN][1000 genomes] |
| rs56329647 | 1.00[ASN][1000 genomes] |
| rs62106487 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6713667 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72781796 | 1.00[ASN][1000 genomes] |
| rs72781798 | 1.00[ASN][1000 genomes] |
| rs72781800 | 1.00[ASN][1000 genomes] |
| rs72781802 | 1.00[ASN][1000 genomes] |
| rs72783710 | 1.00[ASN][1000 genomes] |
| rs72783713 | 1.00[ASN][1000 genomes] |
| rs72783719 | 1.00[ASN][1000 genomes] |
| rs72783724 | 1.00[ASN][1000 genomes] |
| rs72783730 | 1.00[ASN][1000 genomes] |
| rs72783732 | 1.00[ASN][1000 genomes] |
| rs72783735 | 1.00[ASN][1000 genomes] |
| rs921619 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv915888 | chr2:7197783-7461967 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:7286600-7301200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
