The 2.0 version of rSNPBase

Variant report

Variant rs56198546
Chromosome Location chr2:7170989-7170990
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:7148200-7172600 Weak transcription H9 Cell Line embryonic stem cell
2 chr2:7148800-7171400 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr2:7151200-7185200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr2:7152600-7192400 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr2:7154000-7183200 Strong transcription Primary T cells from cord blood blood
6 chr2:7154000-7190200 Strong transcription Dnd41 blood
7 chr2:7154600-7174800 Weak transcription Primary B cells from cord blood blood
8 chr2:7154600-7184200 Weak transcription HUES48 Cell Line embryonic stem cell
9 chr2:7155000-7171400 Strong transcription Primary T helper cells fromperipheralblood blood
10 chr2:7155200-7182000 Strong transcription Primary T helper naive cells fromperipheralblood blood
11 chr2:7155600-7178800 Strong transcription Primary T helper cells PMA-I stimulated --
12 chr2:7157000-7177600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
13 chr2:7157000-7179200 Weak transcription Aorta Aorta
14 chr2:7157200-7185200 Strong transcription Primary hematopoietic stem cells short term culture blood
15 chr2:7158200-7173200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr2:7158200-7188800 Weak transcription iPS-18 Cell Line embryonic stem cell
17 chr2:7158400-7173000 Weak transcription iPS-15b Cell Line embryonic stem cell
18 chr2:7158400-7186800 Weak transcription Placenta Amnion Placenta Amnion
19 chr2:7158600-7173400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr2:7159000-7181000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr2:7159400-7186800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr2:7159600-7180600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
23 chr2:7162000-7171600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
24 chr2:7162800-7171400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
25 chr2:7163000-7171000 Strong transcription Primary T helper naive cells from peripheral blood blood
26 chr2:7163000-7171400 Weak transcription Stomach Mucosa stomach
27 chr2:7163200-7177400 Weak transcription Fetal Brain Male brain
28 chr2:7164000-7171200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
29 chr2:7164000-7171600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
30 chr2:7164000-7177600 Weak transcription NHDF-Ad bronchial
31 chr2:7164000-7178000 Weak transcription K562 blood
32 chr2:7164600-7171200 Weak transcription Fetal Intestine Large intestine
33 chr2:7164600-7182200 Weak transcription Small Intestine intestine
34 chr2:7164800-7189000 Weak transcription H1 Cell Line embryonic stem cell
35 chr2:7165200-7171400 Weak transcription Primary T killer memory cells from peripheral blood blood
36 chr2:7165400-7171200 Weak transcription HUES6 Cell Line embryonic stem cell
37 chr2:7165400-7171200 Weak transcription HUES64 Cell Line embryonic stem cell
38 chr2:7165400-7171600 Weak transcription Primary monocytes fromperipheralblood blood
39 chr2:7165400-7179200 Weak transcription Colonic Mucosa Colon
40 chr2:7166200-7171400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr2:7166800-7173600 Strong transcription Thymus Thymus
42 chr2:7166800-7176400 Strong transcription Brain Germinal Matrix brain
43 chr2:7166800-7177800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr2:7167000-7173800 Strong transcription Fetal Thymus thymus
45 chr2:7167000-7177800 Strong transcription Breast Myoepithelial Primary Cells Breast
46 chr2:7167400-7171800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
47 chr2:7167400-7176600 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
48 chr2:7167400-7200400 Weak transcription Rectal Smooth Muscle rectum
49 chr2:7167800-7171200 Weak transcription Colon Smooth Muscle Colon
50 chr2:7167800-7171400 Weak transcription Gastric stomach

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Last update: Aug 31, 2015