Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1050563	0.88[AMR][1000 genomes]
rs17668045	0.82[AMR][1000 genomes]
rs17668081	0.83[AMR][1000 genomes]
rs34382674	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55650814	0.82[AMR][1000 genomes]
rs55688218	0.82[AMR][1000 genomes]
rs55812000	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55814444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55910201	0.83[AMR][1000 genomes]
rs55977534	0.82[AMR][1000 genomes]
rs56198546	0.82[AMR][1000 genomes]
rs56234546	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56329647	0.94[AMR][1000 genomes]
rs62107983	0.83[AMR][1000 genomes]
rs72783719	0.82[AMR][1000 genomes]
rs72783730	0.82[AMR][1000 genomes]
rs72783732	0.82[AMR][1000 genomes]
rs72783735	0.94[AMR][1000 genomes]
rs72783743	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7425168	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs921619	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469394	chr2:7197199-7230988	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv580914	chr2:7197199-7230988	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7189400-7213800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:7194200-7234000	Weak transcription	Pancreas	Pancrea
3	chr2:7195000-7217000	Weak transcription	Fetal Muscle Leg	muscle
4	chr2:7203000-7214400	Weak transcription	Fetal Kidney	kidney
5	chr2:7203000-7217600	Weak transcription	Adipose Nuclei	Adipose
6	chr2:7203400-7214000	Weak transcription	Fetal Stomach	stomach
7	chr2:7204000-7214000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:7204400-7218600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr2:7209400-7218600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr2:7210600-7214000	Weak transcription	Brain Angular Gyrus	brain
11	chr2:7210600-7214200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
12	chr2:7211400-7217000	Weak transcription	Right Ventricle	heart
13	chr2:7211800-7224000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr2:7212200-7215600	Weak transcription	Dnd41	blood
15	chr2:7213000-7215400	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr2:7213200-7214800	Weak transcription	Primary T cells from cord blood	blood
17	chr2:7213400-7215200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr2:7213400-7218800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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