The 2.0 version of rSNPBase

Variant report

Variant rs55688218
Chromosome Location chr2:7182817-7182818
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:7151200-7185200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr2:7152600-7192400 Weak transcription ES-I3 Cell Line embryonic stem cell
3 chr2:7154000-7183200 Strong transcription Primary T cells from cord blood blood
4 chr2:7154000-7190200 Strong transcription Dnd41 blood
5 chr2:7154600-7184200 Weak transcription HUES48 Cell Line embryonic stem cell
6 chr2:7157200-7185200 Strong transcription Primary hematopoietic stem cells short term culture blood
7 chr2:7158200-7188800 Weak transcription iPS-18 Cell Line embryonic stem cell
8 chr2:7158400-7186800 Weak transcription Placenta Amnion Placenta Amnion
9 chr2:7159400-7186800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr2:7164800-7189000 Weak transcription H1 Cell Line embryonic stem cell
11 chr2:7167400-7200400 Weak transcription Rectal Smooth Muscle rectum
12 chr2:7168000-7185400 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr2:7169600-7184200 Weak transcription Duodenum Smooth Muscle Duodenum
14 chr2:7170800-7187600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr2:7172000-7191200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
16 chr2:7172200-7184200 Weak transcription Gastric stomach
17 chr2:7172200-7186400 Weak transcription Primary monocytes fromperipheralblood blood
18 chr2:7172200-7197200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
19 chr2:7172400-7184400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
20 chr2:7173200-7183000 Weak transcription iPS-20b Cell Line embryonic stem cell
21 chr2:7173400-7183600 Weak transcription H9 Cell Line embryonic stem cell
22 chr2:7173600-7184200 Weak transcription Thymus Thymus
23 chr2:7173600-7189200 Weak transcription HUES6 Cell Line embryonic stem cell
24 chr2:7173800-7188600 Weak transcription Primary T killer memory cells from peripheral blood blood
25 chr2:7174200-7184600 Weak transcription Duodenum Mucosa Duodenum
26 chr2:7174800-7195200 Weak transcription Primary T regulatory cells fromperipheralblood blood
27 chr2:7175400-7187600 Weak transcription Skeletal Muscle Male skeletal muscle
28 chr2:7175600-7183400 Strong transcription Fetal Adrenal Gland Adrenal Gland
29 chr2:7175800-7187400 Weak transcription Fetal Intestine Small intestine
30 chr2:7177800-7183400 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr2:7177800-7184000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr2:7178400-7183000 Strong transcription Brain Anterior Caudate brain
33 chr2:7178400-7197600 Weak transcription Fetal Heart heart
34 chr2:7179000-7183000 Strong transcription Primary hematopoietic stem cells blood
35 chr2:7179200-7183000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr2:7179600-7183000 Strong transcription Primary neutrophils fromperipheralblood blood
37 chr2:7179600-7183000 Strong transcription Brain Cingulate Gyrus brain
38 chr2:7179800-7183000 Strong transcription Lung lung
39 chr2:7180200-7185200 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr2:7180200-7188800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr2:7180400-7184000 Weak transcription Colon Smooth Muscle Colon
42 chr2:7180400-7184400 Weak transcription Fetal Kidney kidney
43 chr2:7180400-7185200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr2:7180600-7186400 Weak transcription Skeletal Muscle Female skeletal muscle
45 chr2:7181000-7183400 Strong transcription Fetal Muscle Leg muscle
46 chr2:7181000-7184600 Weak transcription Primary T killer naive cells fromperipheralblood blood
47 chr2:7181000-7185400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
48 chr2:7181000-7185800 Weak transcription Fetal Thymus thymus
49 chr2:7181000-7186600 Weak transcription HUES64 Cell Line embryonic stem cell
50 chr2:7181000-7188600 Weak transcription Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015