The 2.0 version of rSNPBase

Variant report

Variant rs55977534
Chromosome Location chr2:7182534-7182535
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:7151200-7185200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr2:7152600-7192400 Weak transcription ES-I3 Cell Line embryonic stem cell
3 chr2:7154000-7183200 Strong transcription Primary T cells from cord blood blood
4 chr2:7154000-7190200 Strong transcription Dnd41 blood
5 chr2:7154600-7184200 Weak transcription HUES48 Cell Line embryonic stem cell
6 chr2:7157200-7185200 Strong transcription Primary hematopoietic stem cells short term culture blood
7 chr2:7158200-7188800 Weak transcription iPS-18 Cell Line embryonic stem cell
8 chr2:7158400-7186800 Weak transcription Placenta Amnion Placenta Amnion
9 chr2:7159400-7186800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr2:7164800-7189000 Weak transcription H1 Cell Line embryonic stem cell
11 chr2:7167400-7200400 Weak transcription Rectal Smooth Muscle rectum
12 chr2:7167800-7182800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
13 chr2:7168000-7185400 Weak transcription Rectal Mucosa Donor 29 rectum
14 chr2:7169600-7184200 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr2:7170800-7187600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr2:7172000-7191200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
17 chr2:7172200-7184200 Weak transcription Gastric stomach
18 chr2:7172200-7186400 Weak transcription Primary monocytes fromperipheralblood blood
19 chr2:7172200-7197200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
20 chr2:7172400-7184400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
21 chr2:7173200-7183000 Weak transcription iPS-20b Cell Line embryonic stem cell
22 chr2:7173400-7183600 Weak transcription H9 Cell Line embryonic stem cell
23 chr2:7173600-7184200 Weak transcription Thymus Thymus
24 chr2:7173600-7189200 Weak transcription HUES6 Cell Line embryonic stem cell
25 chr2:7173800-7188600 Weak transcription Primary T killer memory cells from peripheral blood blood
26 chr2:7174200-7184600 Weak transcription Duodenum Mucosa Duodenum
27 chr2:7174800-7195200 Weak transcription Primary T regulatory cells fromperipheralblood blood
28 chr2:7175400-7187600 Weak transcription Skeletal Muscle Male skeletal muscle
29 chr2:7175600-7183400 Strong transcription Fetal Adrenal Gland Adrenal Gland
30 chr2:7175800-7182800 Strong transcription Spleen Spleen
31 chr2:7175800-7187400 Weak transcription Fetal Intestine Small intestine
32 chr2:7177800-7183400 Weak transcription Rectal Mucosa Donor 31 rectum
33 chr2:7177800-7184000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr2:7178000-7182800 Strong transcription Fetal Stomach stomach
35 chr2:7178400-7183000 Strong transcription Brain Anterior Caudate brain
36 chr2:7178400-7197600 Weak transcription Fetal Heart heart
37 chr2:7178800-7182600 Weak transcription Brain Angular Gyrus brain
38 chr2:7178800-7182800 Strong transcription Brain Substantia Nigra brain
39 chr2:7179000-7183000 Strong transcription Primary hematopoietic stem cells blood
40 chr2:7179200-7182600 Strong transcription Primary T helper cells fromperipheralblood blood
41 chr2:7179200-7183000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
42 chr2:7179600-7182800 Strong transcription Primary T helper cells PMA-I stimulated --
43 chr2:7179600-7182800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr2:7179600-7182800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
45 chr2:7179600-7182800 Strong transcription Adipose Nuclei Adipose
46 chr2:7179600-7182800 Strong transcription Fetal Brain Female brain
47 chr2:7179600-7183000 Strong transcription Primary neutrophils fromperipheralblood blood
48 chr2:7179600-7183000 Strong transcription Brain Cingulate Gyrus brain
49 chr2:7179800-7183000 Strong transcription Lung lung
50 chr2:7180000-7182600 Strong transcription Primary T helper naive cells from peripheral blood blood

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Last update: Aug 31, 2015