Variant report

Variant	rs72783743
Chromosome Location	chr2:7190445-7190446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:7189264..7191532-chr2:7195160..7198127,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1050563	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17668045	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17668081	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34382674	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55650814	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55688218	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55812000	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55814444	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55910201	0.83[AMR][1000 genomes]
rs55977534	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56198546	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56234546	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56329647	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62107983	0.83[AMR][1000 genomes]
rs72783719	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72783724	0.95[EUR][1000 genomes]
rs72783730	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72783732	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72783735	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72783761	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783763	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7425168	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs921619	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7152600-7192400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:7167400-7200400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:7172000-7191200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:7172200-7197200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr2:7174800-7195200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr2:7178400-7197600	Weak transcription	Fetal Heart	heart
7	chr2:7182000-7191200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:7182000-7194000	Weak transcription	Ovary	ovary
9	chr2:7182000-7196000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr2:7182000-7198000	Weak transcription	Right Ventricle	heart
11	chr2:7182200-7194600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr2:7182400-7194000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:7182600-7195000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr2:7183000-7194000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr2:7184600-7194000	Weak transcription	Colon Smooth Muscle	Colon
16	chr2:7184800-7194200	Weak transcription	Fetal Brain Male	brain
17	chr2:7184800-7194800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr2:7185400-7193800	Weak transcription	Fetal Kidney	kidney
19	chr2:7186000-7194000	Weak transcription	Fetal Brain Female	brain
20	chr2:7186200-7194000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr2:7186400-7194000	Weak transcription	Brain Substantia Nigra	brain
22	chr2:7186600-7190800	Weak transcription	Fetal Stomach	stomach
23	chr2:7186600-7193800	Weak transcription	Brain Anterior Caudate	brain
24	chr2:7186600-7193800	Weak transcription	Brain Hippocampus Middle	brain
25	chr2:7186600-7193800	Weak transcription	Spleen	Spleen
26	chr2:7186600-7194000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr2:7186600-7197600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr2:7186800-7190800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:7186800-7193800	Weak transcription	Pancreas	Pancrea
30	chr2:7188200-7191400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr2:7188200-7192600	Weak transcription	Right Atrium	heart
32	chr2:7188200-7194800	Weak transcription	Thymus	Thymus
33	chr2:7188400-7191200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
34	chr2:7188800-7200800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr2:7189000-7193200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr2:7189200-7195800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr2:7189400-7194000	Weak transcription	Lung	lung
38	chr2:7189400-7195000	Weak transcription	Primary T cells from cord blood	blood
39	chr2:7189400-7203200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr2:7189400-7213800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr2:7190200-7191200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
42	chr2:7190200-7193800	Weak transcription	Dnd41	blood
43	chr2:7190400-7190600	Enhancers	Fetal Muscle Leg	muscle

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