Variant report

Variant	rs17644604
Chromosome Location	chr15:92599947-92599948
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12900191	0.97[ASN][1000 genomes]
rs12903305	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12910142	0.91[CEU][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs12915368	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17644691	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[CHD][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17695712	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1878558	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1878559	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34044069	0.82[EUR][1000 genomes]
rs34153958	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34250696	0.89[EUR][1000 genomes]
rs34555786	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34650528	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34970645	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34970707	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35319070	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35329561	0.82[EUR][1000 genomes]
rs35884194	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62008574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62008600	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62008601	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62008602	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62008603	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62008606	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62008609	0.82[EUR][1000 genomes]
rs7173864	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs871370	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1049753	chr15:92587172-92600399	Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv9948	chr15:92588543-92606763	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92585400-92601200	Weak transcription	Fetal Brain Male	brain
2	chr15:92591200-92610800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:92591600-92600200	Weak transcription	Ovary	ovary
4	chr15:92593200-92612600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:92593800-92602000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:92594200-92602200	Weak transcription	Spleen	Spleen
7	chr15:92594200-92610800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr15:92594600-92601600	Weak transcription	Esophagus	oesophagus
9	chr15:92595600-92600000	Weak transcription	Fetal Heart	heart
10	chr15:92595600-92600000	Weak transcription	Left Ventricle	heart
11	chr15:92596800-92600200	Weak transcription	Aorta	Aorta
12	chr15:92597200-92600200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:92597400-92601800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:92597600-92600000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr15:92599200-92603000	Enhancers	Brain Cingulate Gyrus	brain
16	chr15:92599200-92603400	Enhancers	Brain Hippocampus Middle	brain
17	chr15:92599600-92601000	Enhancers	Pancreas	Pancrea
18	chr15:92599800-92600400	Weak transcription	Fetal Brain Female	brain
19	chr15:92599800-92601000	Enhancers	Lung	lung
20	chr15:92599800-92602800	Enhancers	Right Atrium	heart
21	chr15:92599800-92603000	Enhancers	Brain Substantia Nigra	brain
22	chr15:92599800-92603200	Enhancers	Brain Angular Gyrus	brain
23	chr15:92599800-92603800	Enhancers	Right Ventricle	heart

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