Variant report

Variant	rs871370
Chromosome Location	chr15:92602618-92602619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92582522..92585507-chr15:92601310..92602850,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12900191	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12903305	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12910142	0.91[CEU][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes]
rs12915368	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17644604	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17644691	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[CHD][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs17695712	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1878558	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1878559	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34044069	0.88[EUR][1000 genomes]
rs34153958	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34250696	0.83[EUR][1000 genomes]
rs34555786	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34650528	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34970645	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34970707	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35319070	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35329561	0.88[EUR][1000 genomes]
rs35884194	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62008574	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62008600	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62008601	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62008602	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62008603	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62008606	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62008609	0.88[EUR][1000 genomes]
rs7173864	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv9948	chr15:92588543-92606763	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92591200-92610800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr15:92593200-92612600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:92594200-92610800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:92599200-92603000	Enhancers	Brain Cingulate Gyrus	brain
5	chr15:92599200-92603400	Enhancers	Brain Hippocampus Middle	brain
6	chr15:92599800-92602800	Enhancers	Right Atrium	heart
7	chr15:92599800-92603000	Enhancers	Brain Substantia Nigra	brain
8	chr15:92599800-92603200	Enhancers	Brain Angular Gyrus	brain
9	chr15:92599800-92603800	Enhancers	Right Ventricle	heart
10	chr15:92600000-92603000	Enhancers	Left Ventricle	heart
11	chr15:92600000-92603200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr15:92600000-92605200	Enhancers	Fetal Heart	heart
13	chr15:92600200-92603400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr15:92600600-92605000	Weak transcription	Aorta	Aorta
15	chr15:92600600-92605000	Weak transcription	Ovary	ovary
16	chr15:92600800-92610200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr15:92601200-92603200	Enhancers	Fetal Brain Male	brain
18	chr15:92601600-92602800	Bivalent Enhancer	Placenta	Placenta
19	chr15:92601600-92603200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr15:92601600-92603400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:92601600-92603400	Enhancers	Esophagus	oesophagus
22	chr15:92601800-92603000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr15:92601800-92603000	Enhancers	Psoas Muscle	Psoas
24	chr15:92601800-92603200	Enhancers	Pancreas	Pancrea
25	chr15:92601800-92603400	Enhancers	HMEC	breast
26	chr15:92602000-92603400	Enhancers	Fetal Brain Female	brain
27	chr15:92602000-92603600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:92602000-92603800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:92602200-92603200	Enhancers	Lung	lung
30	chr15:92602200-92603200	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr15:92602200-92603200	Enhancers	Spleen	Spleen
32	chr15:92602400-92602800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr15:92602400-92602800	Flanking Active TSS	NHEK	skin
34	chr15:92602400-92603000	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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