Variant report

Variant	rs34153958
Chromosome Location	chr15:92611071-92611072
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92605416..92607446-chr15:92609381..92611493,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12900191	0.84[ASN][1000 genomes]
rs12903305	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12910142	0.90[EUR][1000 genomes]
rs12915368	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17644604	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17644691	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17695712	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1878558	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1878559	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34044069	0.90[EUR][1000 genomes]
rs34555786	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34650528	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34970645	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34970707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35319070	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35329561	0.90[EUR][1000 genomes]
rs35884194	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62008574	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62008600	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62008601	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62008602	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62008603	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62008606	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62008609	0.90[EUR][1000 genomes]
rs7173864	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs871370	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92593200-92612600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:92603400-92611400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:92605800-92612000	Weak transcription	Spleen	Spleen
4	chr15:92605800-92612400	Weak transcription	Ovary	ovary
5	chr15:92606200-92611200	Weak transcription	Brain Anterior Caudate	brain
6	chr15:92606400-92612600	Weak transcription	Aorta	Aorta
7	chr15:92606600-92611200	Weak transcription	Left Ventricle	heart
8	chr15:92606800-92612000	Weak transcription	Fetal Heart	heart
9	chr15:92607000-92611600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:92609800-92616000	Enhancers	Brain Cingulate Gyrus	brain
11	chr15:92610000-92613000	Enhancers	Right Atrium	heart
12	chr15:92610200-92611200	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr15:92610400-92611400	Enhancers	Right Ventricle	heart
14	chr15:92610400-92613000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:92610400-92613800	Enhancers	Brain Hippocampus Middle	brain
16	chr15:92610400-92614200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:92610600-92612000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:92610600-92612000	Weak transcription	Esophagus	oesophagus
19	chr15:92610600-92612000	Weak transcription	Lung	lung
20	chr15:92610600-92613200	Enhancers	Brain Angular Gyrus	brain
21	chr15:92610800-92612600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:92610800-92612600	Enhancers	Adipose Nuclei	Adipose
23	chr15:92610800-92612800	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr15:92610800-92613000	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr15:92610800-92613000	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr15:92610800-92615400	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr15:92610800-92620400	Enhancers	Brain Substantia Nigra	brain
28	chr15:92611000-92612200	Enhancers	Fetal Brain Male	brain
29	chr15:92611000-92612400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr15:92611000-92612800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr15:92611000-92612800	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr15:92611000-92613600	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr15:92611000-92615200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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