Variant report

Variant	rs17644691
Chromosome Location	chr15:92615246-92615247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92613588..92616911-chr15:92617353..92620743,5	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12903305	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12910142	0.91[CEU][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs12915368	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17644604	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[CHD][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17695712	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1878558	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1878559	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34044069	0.92[EUR][1000 genomes]
rs34153958	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34555786	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34650528	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34970645	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34970707	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35319070	0.92[EUR][1000 genomes]
rs35329561	0.92[EUR][1000 genomes]
rs35884194	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62008574	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62008600	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62008601	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62008602	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62008603	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62008606	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62008609	0.92[EUR][1000 genomes]
rs7173864	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs871370	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[CHD][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92609800-92616000	Enhancers	Brain Cingulate Gyrus	brain
2	chr15:92610800-92615400	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr15:92610800-92620400	Enhancers	Brain Substantia Nigra	brain
4	chr15:92612200-92616200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr15:92612800-92617400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:92613000-92617600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:92613000-92617800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:92613000-92620600	Weak transcription	Pancreas	Pancrea
9	chr15:92613200-92617600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr15:92613400-92616200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:92613400-92616400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr15:92613400-92616400	Weak transcription	Small Intestine	intestine
13	chr15:92613400-92616600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr15:92613400-92616800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr15:92613400-92617600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr15:92613400-92617600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr15:92613400-92617600	Weak transcription	NHLF	lung
18	chr15:92613400-92617800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr15:92613400-92618000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr15:92613400-92618000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:92613400-92621000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr15:92613600-92615400	Enhancers	Primary hematopoietic stem cells	blood
23	chr15:92613600-92615400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr15:92613600-92615400	Enhancers	Brain Angular Gyrus	brain
25	chr15:92613600-92615400	Enhancers	Brain Anterior Caudate	brain
26	chr15:92613600-92615800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr15:92613600-92616200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr15:92613600-92616400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr15:92613600-92617400	Weak transcription	Osteobl	bone
30	chr15:92613600-92617600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr15:92613600-92617600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr15:92613600-92617600	Weak transcription	A549	lung
33	chr15:92613600-92617600	Weak transcription	HMEC	breast
34	chr15:92613600-92617600	Weak transcription	HUVEC	blood vessel
35	chr15:92613600-92620000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:92613600-92628600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr15:92613800-92615400	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr15:92613800-92615800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr15:92613800-92617400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr15:92613800-92617600	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr15:92613800-92617600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr15:92614000-92616400	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr15:92614000-92616800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr15:92614200-92615400	Enhancers	Gastric	stomach
45	chr15:92614200-92615400	Enhancers	Right Atrium	heart
46	chr15:92614200-92616400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr15:92614200-92621000	Enhancers	Fetal Heart	heart
48	chr15:92614200-92621200	Enhancers	Brain Hippocampus Middle	brain
49	chr15:92614400-92615400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:92614400-92617400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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