Variant report

Variant	rs34970645
Chromosome Location	chr15:92605652-92605653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92605416..92607446-chr15:92609381..92611493,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12900191	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12903305	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12910142	0.92[EUR][1000 genomes]
rs12915368	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17644604	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17644691	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17695712	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1878558	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1878559	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34044069	0.92[EUR][1000 genomes]
rs34153958	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34555786	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34650528	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34970707	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35319070	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35329561	0.92[EUR][1000 genomes]
rs35884194	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62008574	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62008600	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62008601	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62008602	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62008603	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62008606	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62008609	0.92[EUR][1000 genomes]
rs7173864	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs871370	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv9948	chr15:92588543-92606763	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92591200-92610800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr15:92593200-92612600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:92594200-92610800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:92600800-92610200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr15:92603200-92610000	Weak transcription	Lung	lung
6	chr15:92603400-92605800	Weak transcription	Fetal Brain Female	brain
7	chr15:92603400-92611400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:92604200-92606400	Enhancers	Brain Cingulate Gyrus	brain
9	chr15:92604200-92606600	Enhancers	Right Ventricle	heart
10	chr15:92604400-92606200	Enhancers	Brain Anterior Caudate	brain
11	chr15:92604400-92606200	Enhancers	Fetal Brain Male	brain
12	chr15:92604400-92606400	Enhancers	Brain Hippocampus Middle	brain
13	chr15:92604400-92606800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr15:92604800-92606000	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr15:92604800-92606000	Enhancers	Brain Substantia Nigra	brain
16	chr15:92604800-92606200	Enhancers	Psoas Muscle	Psoas
17	chr15:92604800-92606200	Enhancers	Right Atrium	heart
18	chr15:92604800-92606600	Enhancers	Left Ventricle	heart
19	chr15:92604800-92606600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr15:92605000-92605800	Enhancers	Esophagus	oesophagus
21	chr15:92605000-92605800	Enhancers	Ovary	ovary
22	chr15:92605000-92606400	Enhancers	Aorta	Aorta
23	chr15:92605200-92607000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr15:92605600-92605800	Enhancers	Spleen	Spleen
25	chr15:92605600-92606000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:92605600-92606800	Enhancers	Fetal Heart	heart
27	chr15:92605600-92610000	Weak transcription	Brain Angular Gyrus	brain

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